Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G076240.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 10.0 | 5.71 |
| CDY71084 | Canola | cytosol | 10.0 | 4.04 |
| Zm00001d052553_P001 | Maize | cytosol | 10.0 | 3.57 |
| Zm00001d000104_P001 | Maize | cytosol | 10.0 | 3.57 |
| HORVU7Hr1G091030.1 | Barley | cytosol | 5.0 | 2.63 |
| HORVU1Hr1G058980.1 | Barley | cytosol | 5.0 | 2.63 |
| CDX84154 | Canola | cytosol | 10.0 | 2.61 |
| CDX84577 | Canola | cytosol | 10.0 | 2.61 |
| CDX75067 | Canola | cytosol | 10.0 | 2.55 |
| CDX98905 | Canola | cytosol | 10.0 | 2.5 |
| CDY08517 | Canola | cytosol | 10.0 | 2.5 |
| CDY60438 | Canola | cytosol | 10.0 | 2.41 |
| CDY01031 | Canola | cytosol | 10.0 | 2.4 |
| HORVU6Hr1G085630.1 | Barley | cytosol, nucleus | 2.5 | 2.38 |
| CDX73621 | Canola | cytosol | 10.0 | 2.33 |
| CDY26067 | Canola | cytosol | 10.0 | 2.29 |
| CDY00737 | Canola | cytosol | 10.0 | 1.89 |
| CDX73872 | Canola | cytosol | 10.0 | 1.89 |
| CDY71908 | Canola | plastid | 10.0 | 1.84 |
| CDY43745 | Canola | cytosol, plasma membrane | 10.0 | 1.63 |
| HORVU6Hr1G026350.1 | Barley | cytosol | 2.5 | 0.88 |
| VIT_17s0000g10400.t01 | Wine grape | nucleus | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY26068 | EnsemblPlantsGene:GSBRNA2T00034681001 | GO:A0A078GN85 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ProteinID:CDY26068 | ProteinID:CDY26068.1 | TMHMM:TMhelix | UniParc:UPI0004EF3373 | UniProt:A0A078GN85 | MapMan:35.2 |
Description
BnaC06g11280DBnaC06g11280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GN85]
Coordinates
chrLK032185:+:31821..31943
Molecular Weight (calculated)
4352.6 Da
IEP (calculated)
7.122
GRAVY (calculated)
1.415
Length
40 amino acids
Sequence
(BLAST)
(BLAST)
1: MRCCSLNSEH IYLVAILINI VLDFVCAICQ VLVAKSLVSG
001: MPSLKSFSAA EEEDDQLGRN SEAERFNPEA VEKEEDPDKM DEKDESGDEE DDVKRDQVEA EDEEALGEEE DSKERSQSSS AGELSESEYM VVDLADICKD
101: VQCSICLGII RKTRTVMECL HRFCRECIDK SMRLGNNECP TCRKHCASRR SLRDDPNFDA LIAALFKNID KFEEEELNFR QDDEARNKQI QASIAQVSQR
201: QSKALVKRKS VGKGTAILSR SRRSGGGSRR RRNCRNIEQD TSEANDDDDQ NKRGKDSSSD EPCERQRKKR SATQPSSSNA NNNDNCAGNG TEQTHQRDSR
301: VISPVLVWNS ELIAWGRGGT RSNTRQGNNN QGAISKRNAR LKRLVEYLGS LEGNSVELDI HLKLVSLDTE GLLNLHEPYL CFRPTLLVKQ LREYVARHLK
401: LKAEEVELLV SKDGDTVIGN KTSTEKMQSL QDDETVAKLK VDCISSNGYM IVVYRRKQIA
101: VQCSICLGII RKTRTVMECL HRFCRECIDK SMRLGNNECP TCRKHCASRR SLRDDPNFDA LIAALFKNID KFEEEELNFR QDDEARNKQI QASIAQVSQR
201: QSKALVKRKS VGKGTAILSR SRRSGGGSRR RRNCRNIEQD TSEANDDDDQ NKRGKDSSSD EPCERQRKKR SATQPSSSNA NNNDNCAGNG TEQTHQRDSR
301: VISPVLVWNS ELIAWGRGGT RSNTRQGNNN QGAISKRNAR LKRLVEYLGS LEGNSVELDI HLKLVSLDTE GLLNLHEPYL CFRPTLLVKQ LREYVARHLK
401: LKAEEVELLV SKDGDTVIGN KTSTEKMQSL QDDETVAKLK VDCISSNGYM IVVYRRKQIA
Arabidopsis Description
RING1BRING 1B [Source:UniProtKB/TrEMBL;Acc:F4I2H4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.