Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU1Hr1G058980.1 | Barley | cytosol | 13.85 | 11.84 |
| HORVU7Hr1G091030.1 | Barley | cytosol | 13.85 | 11.84 |
| Zm00001d000104_P001 | Maize | cytosol | 15.38 | 8.93 |
| Zm00001d052553_P001 | Maize | cytosol | 15.38 | 8.93 |
| VIT_17s0000g10380.t01 | Wine grape | cytosol | 12.31 | 7.02 |
| VIT_08s0007g03020.t01 | Wine grape | cytosol | 16.92 | 6.75 |
| VIT_11s0103g00410.t01 | Wine grape | cytosol | 9.23 | 6.06 |
| VIT_06s0080g00740.t01 | Wine grape | cytosol | 16.92 | 6.01 |
| HORVU1Hr1G076240.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 4.62 | 4.29 |
| HORVU6Hr1G026350.1 | Barley | cytosol | 4.62 | 2.63 |
| HORVU6Hr1G085630.1 | Barley | cytosol, nucleus | 1.54 | 2.38 |
| CDY26068 | Canola | extracellular | 0.0 | 0.0 |
Protein Annotations
| ArrayExpress:VIT_17s0000g10400 | EMBL:FN594950 | EnsemblPlants:VIT_17s0000g10400.t01 | EnsemblPlantsGene:VIT_17s0000g10400 | ProteinID:CCB42888 | ProteinID:CCB42888.1 |
| UniParc:UPI000210A5D4 | UniProt:F6GSF8 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr17:-:12734443..12734751
Molecular Weight (calculated)
7325.7 Da
IEP (calculated)
6.232
GRAVY (calculated)
-0.678
Length
65 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSEEAPAET MLEVREPNGE SATFGLIRDL GSHHWLHERE NRRGGIFTMR SNAGCPRCFT MMQGT
001: MITGKDMYDV LAAMVPLYVA MILAYGSVRW WGIFTPDQCS GINRFVAVFA VPLLSFHFIS SNDPYAMNYH FLAADSLQKV VILAALFLWQ AFSRRGSLEW
101: MITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VISLNGREPL QTDAEIGDDG
201: KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ
301: SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA
401: KNAMTRGSST DVSTDPKVSI PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM PPASVMTRLI LIMVWRKLIR
501: NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ
601: AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL
101: MITLFSLSTL PNTLVMGIPL LRAMYGDFSG NLMVQIVVLQ SIIWYTLMLF LFEFRGAKLL ISEQFPETAG SITSFRVDSD VISLNGREPL QTDAEIGDDG
201: KLHVVVRRSS AASSMISSFN KSHGGGLNSS MITPRASNLT GVEIYSVQSS REPTPRASSF NQTDFYAMFN ASKAPSPRHG YTNSYGGAGA GPGGDVYSLQ
301: SSKGVTPRTS NFDEEVMKTA KKAGRGGRSM SGELYNNNSV PSYPPPNPMF TGSTSGASGV KKKESGGGGS GGGVGVGGQN KEMNMFVWSS SASPVSEANA
401: KNAMTRGSST DVSTDPKVSI PPHDNLATKA MQNLIENMSP GRKGHVEMDQ DGNNGGKSPY MGKKGSDVED GGPGPRKQQM PPASVMTRLI LIMVWRKLIR
501: NPNTYSSLFG LAWSLVSFKW NIKMPTIMSG SISILSDAGL GMAMFSLGLF MALQPKIIAC GKSVAGFAMA VRFLTGPAVI AATSIAIGIR GDLLHIAIVQ
601: AALPQGIVPF VFAKEYNVHP DILSTAVIFG MLVALPVTVL YYVLLGL
Arabidopsis Description
PIN2Auxin efflux carrier component 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU77]
SUBAcon: [golgi,plasma membrane,vacuole]
SUBAcon: [golgi,plasma membrane,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.