Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G026350.1 | Barley | cytosol | 50.0 | 18.42 |
| HORVU7Hr1G104220.3 | Barley | cytosol, plasma membrane | 64.29 | 17.88 |
| HORVU2Hr1G073150.1 | Barley | cytosol | 59.52 | 16.56 |
| Solyc02g070570.2.1 | Tomato | nucleus | 57.14 | 16.0 |
| PGSC0003DMT400054512 | Potato | cytosol | 57.14 | 16.0 |
| AT3G11510.1 | Thale cress | cytosol | 54.76 | 15.33 |
| PGSC0003DMT400072364 | Potato | cytosol | 54.76 | 15.33 |
| PGSC0003DMT400022864 | Potato | cytosol | 54.76 | 15.33 |
| KRH68612 | Soybean | cytosol | 54.76 | 15.33 |
| KRH21050 | Soybean | cytosol | 54.76 | 15.33 |
| KRH11201 | Soybean | nucleus | 54.76 | 15.33 |
| KRG96883 | Soybean | endoplasmic reticulum, nucleus | 54.76 | 15.33 |
| KRG96881 | Soybean | cytosol | 54.76 | 15.33 |
| AT3G52580.1 | Thale cress | cytosol | 54.76 | 15.33 |
| Solyc10g083280.1.1 | Tomato | extracellular, nucleus | 52.38 | 14.67 |
| Solyc09g010100.2.1 | Tomato | cytosol | 52.38 | 14.67 |
| AT2G36160.1 | Thale cress | cytosol | 52.38 | 14.67 |
| Bra034833.1-P | Field mustard | cytosol | 52.38 | 14.67 |
| Bra023052.1-P | Field mustard | cytosol | 52.38 | 14.67 |
| Bra009165.1-P | Field mustard | cytosol | 52.38 | 14.67 |
| Bra005296.1-P | Field mustard | cytosol | 52.38 | 14.67 |
| Bra001406.1-P | Field mustard | cytosol | 52.38 | 14.67 |
| KRH68609 | Soybean | cytosol | 54.76 | 13.86 |
| Bra002045.1-P | Field mustard | cytosol | 52.38 | 13.58 |
| VIT_11s0103g00410.t01 | Wine grape | cytosol | 30.95 | 13.13 |
| HORVU0Hr1G004130.1 | Barley | plastid | 57.14 | 12.83 |
| HORVU1Hr1G076240.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 7.14 | 4.29 |
| VIT_17s0000g10380.t01 | Wine grape | cytosol | 9.52 | 3.51 |
| CDY26068 | Canola | extracellular | 2.38 | 2.5 |
| VIT_17s0000g10400.t01 | Wine grape | nucleus | 2.38 | 1.54 |
| HORVU7Hr1G091030.1 | Barley | cytosol | 2.38 | 1.32 |
| HORVU1Hr1G058980.1 | Barley | cytosol | 2.38 | 1.32 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G085630.1 | EnsemblPlantsGene:HORVU6Hr1G085630 | UniParc:UPI000B461689 | UniProt:A0A287V0Y6 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr6H:+:559591340..559592065
Molecular Weight (calculated)
4709.6 Da
IEP (calculated)
9.223
GRAVY (calculated)
-0.924
Length
42 amino acids
Sequence
(BLAST)
(BLAST)
1: QSSKRKTREP KEENVTLGPS VREGEHVALL TYLHPSMTPS SM
001: MSKRKTKEPK VENVTLGPAV REGEQVFGVV HVFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AIHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL
Arabidopsis Description
RPS14C40S ribosomal protein S14-3 [Source:UniProtKB/Swiss-Prot;Acc:P42036]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.