Factsheet for Solyc02g070570.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054512	Potato	cytosol	100.0	100.0
Solyc10g083280.1.1	Tomato	extracellular, nucleus	97.33	97.33
Solyc09g010100.2.1	Tomato	cytosol	97.33	97.33
Os02t0162500-01	Rice	nucleus, plasma membrane	94.0	94.0
AT3G11510.1	Thale cress	cytosol	93.33	93.33
EES12290	Sorghum	cytosol	93.33	93.33
EER88715	Sorghum	cytosol	93.33	93.33
EER88707	Sorghum	cytosol	93.33	93.33
Bra023052.1-P	Field mustard	cytosol	92.67	92.67
TraesCS6A01G137300.1	Wheat	cytosol	92.67	92.67
TraesCS6D01G126300.1	Wheat	cytosol	92.67	92.67
Bra005296.1-P	Field mustard	cytosol	92.67	92.67
Bra009165.1-P	Field mustard	cytosol	92.67	92.67
HORVU7Hr1G104220.3	Barley	cytosol, plasma membrane	92.67	92.05
TraesCS7B01G355300.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	92.67	92.05
AT2G36160.1	Thale cress	cytosol	92.0	92.0
AT3G52580.1	Thale cress	cytosol	91.33	91.33
Bra001406.1-P	Field mustard	cytosol	91.33	91.33
Bra034833.1-P	Field mustard	cytosol	91.33	91.33
TraesCS6B01G165600.1	Wheat	cytosol	92.0	90.79
CDX84577	Canola	cytosol	92.0	90.2
CDX84154	Canola	cytosol	92.0	90.2
CDX75067	Canola	cytosol	92.0	87.9
CDX98905	Canola	cytosol	92.0	86.25
CDY08517	Canola	cytosol	92.0	86.25
Bra002045.1-P	Field mustard	cytosol	91.33	84.57
CDY60438	Canola	cytosol	92.67	83.73
CDY01031	Canola	cytosol	92.67	83.23
Zm00001d036568_P001	Maize	cytosol, mitochondrion	92.67	81.29
CDX73621	Canola	cytosol	92.0	80.23
CDY26067	Canola	cytosol	91.33	78.29
Zm00001d046583_P001	Maize	endoplasmic reticulum	93.33	77.78
CDY71084	Canola	cytosol	50.67	76.77
Zm00001d014462_P002	Maize	cytosol	76.67	71.88
KXG20642	Sorghum	cytosol	73.33	69.18
CDX73872	Canola	cytosol	92.67	65.57
CDY00737	Canola	cytosol	92.67	65.57
Zm00001d052553_P001	Maize	cytosol	48.0	64.29
CDY71908	Canola	plastid	92.0	63.59
Zm00001d036565_P002	Maize	cytosol	84.67	61.65
Zm00001d000104_P001	Maize	cytosol	43.33	58.04
Zm00001d036567_P002	Maize	cytosol	83.33	57.87
HORVU6Hr1G085630.1	Barley	cytosol, nucleus	16.0	57.14
CDY43745	Canola	cytosol, plasma membrane	92.0	56.33
HORVU1Hr1G076240.1	Barley	endoplasmic reticulum, extracellular, vacuole	20.0	42.86
HORVU1Hr1G058980.1	Barley	cytosol	20.0	39.47
HORVU7Hr1G091030.1	Barley	cytosol	19.33	38.16
HORVU6Hr1G026350.1	Barley	cytosol	24.67	32.46

Protein Annotations

MapMan:17.1.3.1.15	Gene3D:3.30.420.80	GO:GO:0000028	GO:GO:0000462	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0022627	GO:GO:0030529	GO:GO:0048027	GO:GO:0070181	InterPro:IPR036967	UniProt:K4B838
HAMAP:MF_01310	PFAM:PF00411	PIRSF:PIRSF002131	ScanProsite:PS00054	PANTHER:PTHR11759	PANTHER:PTHR11759:SF11
InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_CS	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	EnsemblPlantsGene:Solyc02g070570.2	EnsemblPlants:Solyc02g070570.2.1
UniParc:UPI00005D37CD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2:+:40303979..40306970

Molecular Weight (calculated)

16359.8 Da

IEP (calculated)

11.360

GRAVY (calculated)

-0.561

Length

150 amino acids

Sequence
(BLAST)

001: MSKRRTREPK EETVTLGPSV REGELVFGVA HIFASFNDTF IHVTDLSGRE TMVRITGGMK VKADRDESSP YAAMLAAQDV SQRCKELGIN ALHIKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Best Arabidopsis Sequence Match ( AT3G11510.1 )
(BLAST)

001: MSKRKTKEPK VETVTLGPSV REGEQVFGVV HIFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AMHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Arabidopsis Description

RPS14BAt3g11510 [Source:UniProtKB/TrEMBL;Acc:Q1H555]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.