CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12290	Sorghum	cytosol	73.58	78.0
EER88715	Sorghum	cytosol	73.58	78.0
EER88707	Sorghum	cytosol	73.58	78.0
Os02t0162500-01	Rice	nucleus, plasma membrane	72.96	77.33
TraesCS6D01G126300.1	Wheat	cytosol	70.44	74.67
TraesCS6A01G137300.1	Wheat	cytosol	70.44	74.67
Bra009165.1-P	Field mustard	cytosol	69.81	74.0
KRH68612	Soybean	cytosol	69.81	74.0
KRH21050	Soybean	cytosol	69.81	74.0
KRG96883	Soybean	endoplasmic reticulum, nucleus	69.81	74.0
KRG96881	Soybean	cytosol	69.81	74.0
Solyc10g083280.1.1	Tomato	extracellular, nucleus	69.81	74.0
Solyc09g010100.2.1	Tomato	cytosol	69.81	74.0
Bra023052.1-P	Field mustard	cytosol	69.81	74.0
Bra005296.1-P	Field mustard	cytosol	69.81	74.0
Bra034833.1-P	Field mustard	cytosol	69.18	73.33
KRH11201	Soybean	nucleus	69.18	73.33
Solyc02g070570.2.1	Tomato	nucleus	69.18	73.33
PGSC0003DMT400072364	Potato	cytosol	69.18	73.33
PGSC0003DMT400022864	Potato	cytosol	69.18	73.33
PGSC0003DMT400054512	Potato	cytosol	69.18	73.33
AT3G11510.1	Thale cress	cytosol	68.55	72.67
Bra001406.1-P	Field mustard	cytosol	68.55	72.67
AT3G52580.1	Thale cress	cytosol	68.55	72.67
AT2G36160.1	Thale cress	cytosol	67.92	72.0
Bra002045.1-P	Field mustard	cytosol	69.18	67.9
KRH68609	Soybean	cytosol	69.81	66.87
Zm00001d036565_P002	Maize	cytosol	86.16	66.5
VIT_06s0080g00740.t01	Wine grape	cytosol	72.96	63.39
Zm00001d036567_P002	Maize	cytosol	82.39	60.65
OQU85061	Sorghum	cytosol, nucleus, plastid	49.06	43.58

Protein Annotations

MapMan:17.1.3.1.15	Gene3D:3.30.420.80	UniProt:A0A194YL20	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036967
EnsemblPlants:KXG20642	ProteinID:KXG20642	ProteinID:KXG20642.1	PFAM:PF00411	PANTHER:PTHR11759	PANTHER:PTHR11759:SF11
InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_sf	EnsemblPlantsGene:SORBI_3010G231800	SUPFAM:SSF53137	UniParc:UPI0007F1B07F	SEG:seg

Description

hypothetical protein

Coordinates

chr10:+:57509743..57511659

Molecular Weight (calculated)

16822.3 Da

IEP (calculated)

8.766

GRAVY (calculated)

-0.185

Length

159 amino acids

Sequence
(BLAST)

001: MSRRKTREPK EENVTLGPTV CEGEYVFGVA NIFASFNDTL IHITDLSGRE TLVKADRDES SPYAAMLAAQ DVAQGCKELG ITALHIKLRA TGGNKTKTPG
101: PGAQSALRAL SGMKIGRIGK NSESSRTLPR CPLTALAEGV VGGEGGCGRL SCMLFAIPW

Best Arabidopsis Sequence Match ( AT3G52580.1 )
(BLAST)

001: MSKRKTKEPK VENVTLGPAV REGEQVFGVV HVFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AIHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Arabidopsis Description

RPS14C40S ribosomal protein S14-3 [Source:UniProtKB/Swiss-Prot;Acc:P42036]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.