Factsheet for Bra001406.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005296.1-P	Field mustard	cytosol	98.0	98.0
Bra009165.1-P	Field mustard	cytosol	98.0	98.0
Bra023052.1-P	Field mustard	cytosol	98.0	98.0
Bra034833.1-P	Field mustard	cytosol	96.67	96.67
AT3G11510.1	Thale cress	cytosol	94.67	94.67
Solyc10g083280.1.1	Tomato	extracellular, nucleus	92.67	92.67
Solyc09g010100.2.1	Tomato	cytosol	92.67	92.67
EES12290	Sorghum	cytosol	92.67	92.67
EER88707	Sorghum	cytosol	92.67	92.67
EER88715	Sorghum	cytosol	92.67	92.67
KRG96883	Soybean	endoplasmic reticulum, nucleus	92.0	92.0
PGSC0003DMT400022864	Potato	cytosol	92.0	92.0
Os02t0162500-01	Rice	nucleus, plasma membrane	92.0	92.0
PGSC0003DMT400072364	Potato	cytosol	92.0	92.0
KRH68612	Soybean	cytosol	92.0	92.0
KRH21050	Soybean	cytosol	92.0	92.0
KRG96881	Soybean	cytosol	92.0	92.0
TraesCS6A01G137300.1	Wheat	cytosol	92.0	92.0
TraesCS6D01G126300.1	Wheat	cytosol	92.0	92.0
KRH11201	Soybean	nucleus	91.33	91.33
Solyc02g070570.2.1	Tomato	nucleus	91.33	91.33
PGSC0003DMT400054512	Potato	cytosol	91.33	91.33
HORVU7Hr1G104220.3	Barley	cytosol, plasma membrane	91.33	90.73
TraesCS7B01G355300.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	91.33	90.73
TraesCS6B01G165600.1	Wheat	cytosol	91.33	90.13
Bra002045.1-P	Field mustard	cytosol	96.67	89.51
VIT_08s0007g03020.t01	Wine grape	cytosol	92.67	85.28
KRH68609	Soybean	cytosol	92.0	83.13
Zm00001d036568_P001	Maize	cytosol, mitochondrion	92.0	80.7
Zm00001d046583_P001	Maize	endoplasmic reticulum	92.67	77.22
Zm00001d014462_P002	Maize	cytosol	75.33	70.62
CDX73872	Canola	cytosol	98.0	69.34
KXG20642	Sorghum	cytosol	72.67	68.55
Zm00001d052553_P001	Maize	cytosol	47.33	63.39
Zm00001d036565_P002	Maize	cytosol	84.0	61.16
Zm00001d000104_P001	Maize	cytosol	43.33	58.04
Zm00001d036567_P002	Maize	cytosol	82.67	57.41
HORVU6Hr1G085630.1	Barley	cytosol, nucleus	14.67	52.38
HORVU1Hr1G076240.1	Barley	endoplasmic reticulum, extracellular, vacuole	20.0	42.86
HORVU1Hr1G058980.1	Barley	cytosol	20.67	40.79
HORVU7Hr1G091030.1	Barley	cytosol	20.0	39.47
HORVU6Hr1G026350.1	Barley	cytosol	25.33	33.33

Protein Annotations

MapMan:17.1.3.1.15	Gene3D:3.30.420.80	EnsemblPlantsGene:Bra001406	EnsemblPlants:Bra001406.1	EnsemblPlants:Bra001406.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	InterPro:IPR036967	UniProt:M4CB27	HAMAP:MF_01310	PFAM:PF00411
PIRSF:PIRSF002131	ScanProsite:PS00054	PANTHER:PTHR11759	PANTHER:PTHR11759:SF11	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_CS
InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	UniParc:UPI000254071B	SEG:seg	:	:

Description

AT3G11510 (E=3e-062) | 40S ribosomal protein S14 (RPS14B)

Coordinates

chrA03:-:16229006..16230216

Molecular Weight (calculated)

16345.8 Da

IEP (calculated)

11.391

GRAVY (calculated)

-0.567

Length

150 amino acids

Sequence
(BLAST)

001: MSRRKTREPK EETVTLGPAV RDGEKVFGVV HLFSSFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AMHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Best Arabidopsis Sequence Match ( AT2G36160.1 )
(BLAST)

001: MSKRKTKEPK VDVVTLGPSV REGEQVFGVV HIFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AMHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Arabidopsis Description

RPS14A40S ribosomal protein S14-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.