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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:
  • nucleus 1
  • cytosol 5
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 27780359 doi
G Mustafa, S Komatsu
Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 23041469 doi
S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRG96881 Soybean cytosol 100.0 100.0
KRH21050 Soybean cytosol 100.0 100.0
KRH68612 Soybean cytosol 100.0 100.0
KRH11201 Soybean nucleus 99.33 99.33
EER88707 Sorghum cytosol 93.33 93.33
EER88715 Sorghum cytosol 93.33 93.33
EES12290 Sorghum cytosol 93.33 93.33
TraesCS6D01G126300.1 Wheat cytosol 93.33 93.33
Bra005296.1-P Field mustard cytosol 93.33 93.33
Bra009165.1-P Field mustard cytosol 93.33 93.33
Bra023052.1-P Field mustard cytosol 93.33 93.33
TraesCS6A01G137300.1 Wheat cytosol 93.33 93.33
TraesCS7B01G355300.1 Wheat cytosol, golgi, nucleus, plastid, unclear 93.33 92.72
HORVU7Hr1G104220.3 Barley cytosol, plasma membrane 93.33 92.72
Os02t0162500-01 Rice nucleus, plasma membrane 92.67 92.67
Bra034833.1-P Field mustard cytosol 92.67 92.67
Bra001406.1-P Field mustard cytosol 92.0 92.0
TraesCS6B01G165600.1 Wheat cytosol 92.67 91.45
CDX84577 Canola cytosol 92.67 90.85
CDX84154 Canola cytosol 92.67 90.85
AT3G52580.1 Thale cress cytosol 90.67 90.67
KRH68609 Soybean cytosol 100.0 90.36
AT3G11510.1 Thale cress cytosol 90.0 90.0
AT2G36160.1 Thale cress cytosol 89.33 89.33
CDX75067 Canola cytosol 92.67 88.53
VIT_08s0007g03020.t01 Wine grape cytosol 95.33 87.73
CDY08517 Canola cytosol 92.67 86.88
CDX98905 Canola cytosol 92.67 86.88
Bra002045.1-P Field mustard cytosol 92.0 85.19
CDY60438 Canola cytosol 93.33 84.34
CDY01031 Canola cytosol 93.33 83.83
Zm00001d036568_P001 Maize cytosol, mitochondrion 92.67 81.29
CDX73621 Canola cytosol 92.67 80.81
CDY26067 Canola cytosol 93.33 80.0
Zm00001d046583_P001 Maize endoplasmic reticulum 93.33 77.78
CDY71084 Canola cytosol 50.67 76.77
Zm00001d014462_P002 Maize cytosol 76.0 71.25
KXG20642 Sorghum cytosol 74.0 69.81
CDX73872 Canola cytosol 93.33 66.04
CDY00737 Canola cytosol 93.33 66.04
Zm00001d052553_P001 Maize cytosol 48.0 64.29
CDY71908 Canola plastid 92.67 64.06
Zm00001d036565_P002 Maize cytosol 84.67 61.65
Zm00001d000104_P001 Maize cytosol 44.0 58.93
Zm00001d036567_P002 Maize cytosol 83.33 57.87
CDY43745 Canola cytosol, plasma membrane 92.67 56.73
HORVU6Hr1G085630.1 Barley cytosol, nucleus 15.33 54.76
HORVU1Hr1G076240.1 Barley endoplasmic reticulum, extracellular, vacuole 20.67 44.29
HORVU1Hr1G058980.1 Barley cytosol 20.67 40.79
HORVU7Hr1G091030.1 Barley cytosol 20.0 39.47
HORVU6Hr1G026350.1 Barley cytosol 25.33 33.33
Protein Annotations
EntrezGene:100499665EntrezGene:100780604EntrezGene:100785807EntrezGene:100786325EntrezGene:100787077MapMan:17.1.3.1.15
Gene3D:3.30.420.80EMBL:ACUP02002121EMBL:ACUP02008334EMBL:ACUP02012167EMBL:BT089087EMBL:BT096999
UniProt:C6SV94EnsemblPlantsGene:GLYMA_19G238800GO:GO:0000028GO:GO:0000462GO:GO:0003674GO:GO:0003676
GO:GO:0003723GO:GO:0003735GO:GO:0005198GO:GO:0005488GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005829GO:GO:0005840GO:GO:0006139GO:GO:0006412
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0016043GO:GO:0019538
GO:GO:0022627GO:GO:0030529GO:GO:0048027GO:GO:0070181InterPro:IPR036967ProteinID:KRG96881.1
EnsemblPlants:KRG96883ProteinID:KRG96883ProteinID:KRG96883.1ProteinID:KRH21050.1ProteinID:KRH68610.1ProteinID:KRH68612.1
HAMAP:MF_01310PFAM:PF00411PIRSF:PIRSF002131ScanProsite:PS00054PANTHER:PTHR11759PANTHER:PTHR11759:SF11
InterPro:Ribosomal_S11InterPro:Ribosomal_S11_CSInterPro:Ribosomal_S11_sfSUPFAM:SSF53137UniParc:UPI0001AE621ASEG:seg
Description
hypothetical protein
Coordinates
chr19:+:48732230..48734444
Molecular Weight (calculated)
16295.7 Da
IEP (calculated)
11.497
GRAVY (calculated)
-0.505
Length
150 amino acids
Sequence
(BLAST)
001: MSRRKVREPK EENVTLGPAV RDGEHVFGVA RIFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AARCKELGIT ALHIKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPSDSTR RKSGRRGRRL
Best Arabidopsis Sequence Match ( AT3G52580.1 )
(BLAST)
001: MSKRKTKEPK VENVTLGPAV REGEQVFGVV HVFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AIHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL
Arabidopsis Description
RPS14C40S ribosomal protein S14-3 [Source:UniProtKB/Swiss-Prot;Acc:P42036]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.