CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	plastid
PProwler:	mitochondrion
TargetP:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84154	Canola	cytosol	68.66	97.39
CDX84577	Canola	cytosol	68.66	97.39
AT3G11510.1	Thale cress	cytosol	66.36	96.0
CDY08517	Canola	cytosol	69.59	94.38
CDX75067	Canola	cytosol	68.2	94.27
CDY01031	Canola	cytosol	72.35	94.01
Solyc10g083280.1.1	Tomato	extracellular, nucleus	64.52	93.33
Solyc09g010100.2.1	Tomato	cytosol	64.52	93.33
CDX98905	Canola	cytosol	68.66	93.12
KRH21050	Soybean	cytosol	64.06	92.67
KRG96883	Soybean	endoplasmic reticulum, nucleus	64.06	92.67
KRG96881	Soybean	cytosol	64.06	92.67
KRH68612	Soybean	cytosol	64.06	92.67
PGSC0003DMT400022864	Potato	cytosol	64.06	92.67
PGSC0003DMT400072364	Potato	cytosol	64.06	92.67
Bra002045.1-P	Field mustard	cytosol	69.12	92.59
PGSC0003DMT400054512	Potato	cytosol	63.59	92.0
Solyc02g070570.2.1	Tomato	nucleus	63.59	92.0
KRH11201	Soybean	nucleus	63.59	92.0
CDY60438	Canola	cytosol	69.12	90.36
CDX73621	Canola	cytosol	69.12	87.21
VIT_08s0007g03020.t01	Wine grape	cytosol	65.44	87.12
CDY26067	Canola	cytosol	69.12	85.71
KRH68609	Soybean	cytosol	64.06	83.73
CDY71084	Canola	cytosol	37.33	81.82
CDY00737	Canola	cytosol	73.27	75.0
CDX73872	Canola	cytosol	72.35	74.06
CDY43745	Canola	cytosol, plasma membrane	70.51	62.45
CDY26068	Canola	extracellular	1.84	10.0

Protein Annotations

MapMan:17.1.3.1.15	Gene3D:3.30.420.80	GO:A0A078JW87	UniProt:A0A078JW87	EnsemblPlants:CDY71908	ProteinID:CDY71908
ProteinID:CDY71908.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00022482001	InterPro:IPR036967
HAMAP:MF_01310	PFAM:PF00411	ScanProsite:PS00054	PANTHER:PTHR11759	PANTHER:PTHR11759:SF11	InterPro:Ribosomal_S11
InterPro:Ribosomal_S11_CS	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	UniParc:UPI0004EEF64A	SEG:seg	:

Description

BnaAnng39250DBnaAnng39250D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JW87]

Coordinates

chrLK048081:-:293..2389

Molecular Weight (calculated)

23492.4 Da

IEP (calculated)

10.980

GRAVY (calculated)

-0.351

Length

217 amino acids

Sequence
(BLAST)

001: CSKLLAFIHS RVGESKLRAV FKKYSKAERC AVALVSSPAK SPLLSSSASC SLENAEFHFA SSHPLVNMSR RKTREPKEET VTLGPAVRDG EQVFGVVHIF
101: ASFNDTFIHV TDLSGRETLV RITGGMKVKA DRDESSPYAA MLAAQDVAQR CKELGITAMH VKLRATGGNK TKTPGPGAQS ALRALARSGM KIGRIEDVTP
201: VPTDSTRRKG GRRGRRL

Best Arabidopsis Sequence Match ( AT2G36160.1 )
(BLAST)

001: MSKRKTKEPK VDVVTLGPSV REGEQVFGVV HIFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AMHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Arabidopsis Description

RPS14A40S ribosomal protein S14-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.