CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009165.1-P	Field mustard	cytosol	90.36	100.0
CDX84154	Canola	cytosol	89.76	97.39
CDX84577	Canola	cytosol	89.76	97.39
CDX75067	Canola	cytosol	89.76	94.9
Solyc09g010100.2.1	Tomato	cytosol	84.94	94.0
Solyc10g083280.1.1	Tomato	extracellular, nucleus	84.94	94.0
CDX98905	Canola	cytosol	90.36	93.75
PGSC0003DMT400072364	Potato	cytosol	84.34	93.33
PGSC0003DMT400022864	Potato	cytosol	84.34	93.33
KRG96881	Soybean	cytosol	84.34	93.33
KRG96883	Soybean	endoplasmic reticulum, nucleus	84.34	93.33
KRH21050	Soybean	cytosol	84.34	93.33
KRH68612	Soybean	cytosol	84.34	93.33
CDY08517	Canola	cytosol	89.76	93.12
Solyc02g070570.2.1	Tomato	nucleus	83.73	92.67
PGSC0003DMT400054512	Potato	cytosol	83.73	92.67
KRH11201	Soybean	nucleus	83.73	92.67
CDY01031	Canola	cytosol	90.96	90.42
VIT_08s0007g03020.t01	Wine grape	cytosol	86.14	87.73
CDX73621	Canola	cytosol	90.36	87.21
CDY26067	Canola	cytosol	90.36	85.71
KRH68609	Soybean	cytosol	84.34	84.34
CDY71084	Canola	cytosol	48.8	81.82
CDY00737	Canola	cytosol	90.96	71.23
CDX73872	Canola	cytosol	90.96	71.23
CDY71908	Canola	plastid	90.36	69.12
CDY43745	Canola	cytosol, plasma membrane	90.36	61.22
CDY26068	Canola	extracellular	2.41	10.0

Protein Annotations

MapMan:17.1.3.1.15	Gene3D:3.30.420.80	GO:A0A078J6S3	UniProt:A0A078J6S3	EnsemblPlants:CDY60438	ProteinID:CDY60438
ProteinID:CDY60438.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00029600001	InterPro:IPR036967
HAMAP:MF_01310	PFAM:PF00411	PIRSF:PIRSF002131	ScanProsite:PS00054	PANTHER:PTHR11759	PANTHER:PTHR11759:SF11
InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_CS	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	UniParc:UPI0004EF096E	SEG:seg

Description

BnaA10g30460DBnaA10g30460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J6S3]

Coordinates

chrLK033880:-:22634..24135

Molecular Weight (calculated)

18182.2 Da

IEP (calculated)

10.934

GRAVY (calculated)

-0.431

Length

166 amino acids

Sequence
(BLAST)

001: MYGILVLDKI EYKLTAMSRR KTREPKEETV TLGPAVRDGE QVFGVVHIFA SFNDTFIHVT DLSGRETLVR ITGGMKVKAD RDESSPYAAM LAAQDVAQRC
101: KELGITAMHV KLRATGGNKT KTPGPGAQSA LRALARSGMK IGRIEDVTPI PTDSTRRKGG RRGRRL

Best Arabidopsis Sequence Match ( AT3G11510.1 )
(BLAST)

001: MSKRKTKEPK VETVTLGPSV REGEQVFGVV HIFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AMHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Arabidopsis Description

RPS14BAt3g11510 [Source:UniProtKB/TrEMBL;Acc:Q1H555]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.