Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84577 | Canola | cytosol | 86.05 | 96.73 |
| CDX84154 | Canola | cytosol | 86.05 | 96.73 |
| CDY08517 | Canola | cytosol | 88.37 | 95.0 |
| AT3G52580.1 | Thale cress | cytosol | 82.56 | 94.67 |
| CDX75067 | Canola | cytosol | 86.05 | 94.27 |
| Solyc10g083280.1.1 | Tomato | extracellular, nucleus | 81.4 | 93.33 |
| Solyc09g010100.2.1 | Tomato | cytosol | 81.4 | 93.33 |
| PGSC0003DMT400072364 | Potato | cytosol | 80.81 | 92.67 |
| PGSC0003DMT400022864 | Potato | cytosol | 80.81 | 92.67 |
| KRH68612 | Soybean | cytosol | 80.81 | 92.67 |
| KRH21050 | Soybean | cytosol | 80.81 | 92.67 |
| KRG96881 | Soybean | cytosol | 80.81 | 92.67 |
| KRG96883 | Soybean | endoplasmic reticulum, nucleus | 80.81 | 92.67 |
| CDX98905 | Canola | cytosol | 86.05 | 92.5 |
| PGSC0003DMT400054512 | Potato | cytosol | 80.23 | 92.0 |
| Solyc02g070570.2.1 | Tomato | nucleus | 80.23 | 92.0 |
| KRH11201 | Soybean | nucleus | 80.23 | 92.0 |
| CDY60438 | Canola | cytosol | 87.21 | 90.36 |
| CDY01031 | Canola | cytosol | 86.63 | 89.22 |
| VIT_08s0007g03020.t01 | Wine grape | cytosol | 81.4 | 85.89 |
| CDY26067 | Canola | cytosol | 86.63 | 85.14 |
| KRH68609 | Soybean | cytosol | 80.81 | 83.73 |
| CDY71084 | Canola | cytosol | 47.09 | 81.82 |
| CDY00737 | Canola | cytosol | 87.79 | 71.23 |
| CDX73872 | Canola | cytosol | 87.21 | 70.75 |
| CDY71908 | Canola | plastid | 87.21 | 69.12 |
| CDY43745 | Canola | cytosol, plasma membrane | 87.21 | 61.22 |
| CDY26068 | Canola | extracellular | 2.33 | 10.0 |
Protein Annotations
| MapMan:17.1.3.1.15 | Gene3D:3.30.420.80 | GO:A0A078C984 | EnsemblPlants:CDX73621 | ProteinID:CDX73621 | ProteinID:CDX73621.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00109187001 | InterPro:IPR036967 | HAMAP:MF_01310 | PFAM:PF00411 |
| PIRSF:PIRSF002131 | ScanProsite:PS00054 | PANTHER:PTHR11759 | PANTHER:PTHR11759:SF11 | InterPro:Ribosomal_S11 | InterPro:Ribosomal_S11_CS |
| InterPro:Ribosomal_S11_sf | SUPFAM:SSF53137 | UniParc:UPI0004EDFE71 | SEG:seg | : | : |
Description
BnaC08g23820D
Coordinates
chrLK031799:-:1678569..1680166
Molecular Weight (calculated)
18749.8 Da
IEP (calculated)
11.446
GRAVY (calculated)
-0.645
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKVLGHTE GGKTQEKPKI RTMSRRKTRE PKEETVTLGP AVRDGEQVFG VVHIFASFND TFIHVTDLSG RETLVRITGG MKVKADRDES SPYAAMLAAQ
101: DVAQRCKELG ITAMHVKLRA TGGNKTKTPG PGAQSALRAL ARSGMKIGRI EDVTPVPTDS TRRKGGRRGR RL
101: DVAQRCKELG ITAMHVKLRA TGGNKTKTPG PGAQSALRAL ARSGMKIGRI EDVTPVPTDS TRRKGGRRGR RL
001: MAKPILRIGS RKNTRSGSRK NVRRIPKGVI HVQASFNNTI VTVTDVRGRV ISWSSAGTCG FRGTRRGTPF AAQTAAGNAI RAVVDQGMQR AEVRIKGPGL
101: GRDAALRAIR RSGILLSFVR DVTPMPHNGC RPPKKRRV
101: GRDAALRAIR RSGILLSFVR DVTPMPHNGC RPPKKRRV
Arabidopsis Description
RPS1130S ribosomal protein S11, chloroplastic [Source:UniProtKB/TrEMBL;Acc:A0A1B1W4X8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.