Factsheet for PGSC0003DMT400072364

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400022864	Potato	cytosol	100.0	100.0
Solyc10g083280.1.1	Tomato	extracellular, nucleus	99.33	99.33
PGSC0003DMT400054512	Potato	cytosol	98.0	98.0
Os02t0162500-01	Rice	nucleus, plasma membrane	94.0	94.0
TraesCS6D01G126300.1	Wheat	cytosol	93.33	93.33
TraesCS6A01G137300.1	Wheat	cytosol	93.33	93.33
Bra005296.1-P	Field mustard	cytosol	93.33	93.33
Bra009165.1-P	Field mustard	cytosol	93.33	93.33
Bra023052.1-P	Field mustard	cytosol	93.33	93.33
EES12290	Sorghum	cytosol	93.33	93.33
EER88715	Sorghum	cytosol	93.33	93.33
EER88707	Sorghum	cytosol	93.33	93.33
TraesCS7B01G355300.1	Wheat	cytosol, golgi, nucleus, plastid, unclear	93.33	92.72
HORVU7Hr1G104220.3	Barley	cytosol, plasma membrane	93.33	92.72
AT3G11510.1	Thale cress	cytosol	92.67	92.67
AT3G52580.1	Thale cress	cytosol	92.0	92.0
Bra001406.1-P	Field mustard	cytosol	92.0	92.0
Bra034833.1-P	Field mustard	cytosol	92.0	92.0
TraesCS6B01G165600.1	Wheat	cytosol	92.67	91.45
AT2G36160.1	Thale cress	cytosol	91.33	91.33
CDX84577	Canola	cytosol	92.67	90.85
CDX84154	Canola	cytosol	92.67	90.85
CDX75067	Canola	cytosol	92.67	88.53
CDY08517	Canola	cytosol	92.67	86.88
CDX98905	Canola	cytosol	92.67	86.88
Bra002045.1-P	Field mustard	cytosol	92.0	85.19
CDY60438	Canola	cytosol	93.33	84.34
CDY01031	Canola	cytosol	93.33	83.83
Zm00001d036568_P001	Maize	cytosol, mitochondrion	92.67	81.29
CDX73621	Canola	cytosol	92.67	80.81
CDY26067	Canola	cytosol	92.0	78.86
Zm00001d046583_P001	Maize	endoplasmic reticulum	93.33	77.78
CDY71084	Canola	cytosol	50.67	76.77
Zm00001d014462_P002	Maize	cytosol	76.67	71.88
KXG20642	Sorghum	cytosol	73.33	69.18
CDX73872	Canola	cytosol	93.33	66.04
CDY00737	Canola	cytosol	93.33	66.04
Zm00001d052553_P001	Maize	cytosol	48.0	64.29
CDY71908	Canola	plastid	92.67	64.06
Zm00001d036565_P002	Maize	cytosol	84.67	61.65
Zm00001d000104_P001	Maize	cytosol	43.33	58.04
Zm00001d036567_P002	Maize	cytosol	83.33	57.87
CDY43745	Canola	cytosol, plasma membrane	92.67	56.73
HORVU6Hr1G085630.1	Barley	cytosol, nucleus	15.33	54.76
HORVU1Hr1G076240.1	Barley	endoplasmic reticulum, extracellular, vacuole	20.0	42.86
HORVU1Hr1G058980.1	Barley	cytosol	20.0	39.47
HORVU7Hr1G091030.1	Barley	cytosol	19.33	38.16
HORVU6Hr1G026350.1	Barley	cytosol	24.67	32.46

Protein Annotations

EntrezGene:102595055	EntrezGene:102604893	MapMan:17.1.3.1.15	Gene3D:3.30.420.80	ProteinID:ABB87124	ProteinID:ABB87124.1
ProteinID:ABB87125	ProteinID:ABB87125.1	ProteinID:ABC01912	ProteinID:ABC01912.1	EMBL:DQ241853	EMBL:DQ241854
EMBL:DQ294280	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR036967	UniProt:M1CQ57
HAMAP:MF_01310	PFAM:PF00411	EnsemblPlantsGene:PGSC0003DMG400028162	PGSC:PGSC0003DMG400028162	EnsemblPlants:PGSC0003DMT400072364	PIRSF:PIRSF002131
ScanProsite:PS00054	PANTHER:PTHR11759	PANTHER:PTHR11759:SF11	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_CS	InterPro:Ribosomal_S11_sf
SUPFAM:SSF53137	UniParc:UPI0002957111	RefSeq:XP_006339137.1	RefSeq:XP_006341085.1	SEG:seg	:

Description

Ribosomal protein S14 [Source:PGSC_GENE;Acc:PGSC0003DMG400028162]

Coordinates

chr10:-:55857566..55860766

Molecular Weight (calculated)

16317.8 Da

IEP (calculated)

11.257

GRAVY (calculated)

-0.573

Length

150 amino acids

Sequence
(BLAST)

001: MSKRKTREPK EETVTLGPAT REGELVFGVA HIFASFNDTF IHVTDLSGRE TMVRITGGMK VKADRDESSP YAAMLAAQDV SQRCKELGIN ALHIKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Best Arabidopsis Sequence Match ( AT3G11510.1 )
(BLAST)

001: MSKRKTKEPK VETVTLGPSV REGEQVFGVV HIFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AMHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Arabidopsis Description

RPS14BAt3g11510 [Source:UniProtKB/TrEMBL;Acc:Q1H555]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.