Factsheet for TraesCS7B01G355300.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, cytosol, golgi, nucleus

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22160430
golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G104220.3	Barley	cytosol, plasma membrane	100.0	100.0
TraesCS6B01G165600.1	Wheat	cytosol	98.01	97.37
TraesCS2B01G312000.1	Wheat	cytosol	96.69	96.69
EES12290	Sorghum	cytosol	96.03	96.67
EER88715	Sorghum	cytosol	96.03	96.67
EER88707	Sorghum	cytosol	96.03	96.67
PGSC0003DMT400072364	Potato	cytosol	92.72	93.33
PGSC0003DMT400022864	Potato	cytosol	92.72	93.33
KRH68612	Soybean	cytosol	92.72	93.33
KRG96881	Soybean	cytosol	92.72	93.33
KRG96883	Soybean	endoplasmic reticulum, nucleus	92.72	93.33
KRH21050	Soybean	cytosol	92.72	93.33
Solyc02g070570.2.1	Tomato	nucleus	92.05	92.67
Bra009165.1-P	Field mustard	cytosol	92.05	92.67
PGSC0003DMT400054512	Potato	cytosol	92.05	92.67
Solyc09g010100.2.1	Tomato	cytosol	92.05	92.67
KRH11201	Soybean	nucleus	92.05	92.67
AT3G52580.1	Thale cress	cytosol	92.05	92.67
Solyc10g083280.1.1	Tomato	extracellular, nucleus	92.05	92.67
Bra005296.1-P	Field mustard	cytosol	92.05	92.67
Bra034833.1-P	Field mustard	cytosol	92.05	92.67
Bra023052.1-P	Field mustard	cytosol	92.05	92.67
AT3G11510.1	Thale cress	cytosol	91.39	92.0
Bra001406.1-P	Field mustard	cytosol	90.73	91.33
AT2G36160.1	Thale cress	cytosol	90.73	91.33
Bra002045.1-P	Field mustard	cytosol	92.72	86.42
KRH68609	Soybean	cytosol	92.72	84.34
Zm00001d036568_P001	Maize	cytosol, mitochondrion	94.7	83.63
Zm00001d046583_P001	Maize	endoplasmic reticulum	95.36	80.0
Zm00001d014462_P002	Maize	cytosol	77.48	73.12
VIT_06s0080g00740.t01	Wine grape	cytosol	81.46	67.21

Protein Annotations

MapMan:17.1.3.1.15	Gene3D:3.30.420.80	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036967	HAMAP:MF_01310
PFAM:PF00411	PIRSF:PIRSF002131	ScanProsite:PS00054	PANTHER:PTHR11759	PANTHER:PTHR11759:SF11	InterPro:Ribosomal_S11
InterPro:Ribosomal_S11_CS	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	EnsemblPlantsGene:TraesCS7B01G355300	EnsemblPlants:TraesCS7B01G355300.1	SEG:seg

Description

No Description!

Coordinates

chr7B:-:614220308..614221899

Molecular Weight (calculated)

16367.7 Da

IEP (calculated)

11.257

GRAVY (calculated)

-0.559

Length

151 amino acids

Sequence
(BLAST)

001: MSSKRKTREP KEENVTLGPA VREGEHVFGV AHIFASFNDT FIHVTDLSGR ETLVRITGGM KVKADRDESS PYAAMLASQD VATRCKELGI TALHIKLRAT
101: GGNKTKTPGP GAQSALRALA RSGMKIGRIE DVTPVPTDST RRKGGRRGRR L

Best Arabidopsis Sequence Match ( AT3G52580.1 )
(BLAST)

001: MSKRKTKEPK VENVTLGPAV REGEQVFGVV HVFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AIHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Arabidopsis Description

RPS14C40S ribosomal protein S14-3 [Source:UniProtKB/Swiss-Prot;Acc:P42036]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.