Factsheet for Os02t0162500-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus

Predictor Summary:

nucleus 1
cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plasma membrane: 19502382
nucleus: 19621931
cytosol: 19685898
nucleus: 23777608
golgi: 25047511
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 19685898 doi

KA Doroshenk, AJ Crofts, RT Morris, JJ Wyrick, TW Okita

Institute of Biological Chemistry, Washington State University, Pullman, Washington 99164-6340, USA.

msms PMID: 19502382 doi

M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto

Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12290	Sorghum	cytosol	99.33	99.33
EER88715	Sorghum	cytosol	99.33	99.33
EER88707	Sorghum	cytosol	99.33	99.33
TraesCS6A01G137300.1	Wheat	cytosol	97.33	97.33
TraesCS6D01G126300.1	Wheat	cytosol	97.33	97.33
Os04t0413600-01	Rice	cytosol, nucleus	97.33	96.69
Os02t0534800-01	Rice	cytosol	97.33	96.69
HORVU7Hr1G104220.3	Barley	cytosol, plasma membrane	97.33	96.69
TraesCS6B01G165600.1	Wheat	cytosol	96.67	95.39
Solyc02g070570.2.1	Tomato	nucleus	94.0	94.0
PGSC0003DMT400072364	Potato	cytosol	94.0	94.0
PGSC0003DMT400054512	Potato	cytosol	94.0	94.0
PGSC0003DMT400022864	Potato	cytosol	94.0	94.0
Bra034833.1-P	Field mustard	cytosol	93.33	93.33
Bra023052.1-P	Field mustard	cytosol	93.33	93.33
Bra009165.1-P	Field mustard	cytosol	93.33	93.33
Bra005296.1-P	Field mustard	cytosol	93.33	93.33
AT3G52580.1	Thale cress	cytosol	93.33	93.33
Solyc10g083280.1.1	Tomato	extracellular, nucleus	93.33	93.33
Solyc09g010100.2.1	Tomato	cytosol	93.33	93.33
AT3G11510.1	Thale cress	cytosol	93.33	93.33
KRH68612	Soybean	cytosol	92.67	92.67
AT2G36160.1	Thale cress	cytosol	92.67	92.67
KRH21050	Soybean	cytosol	92.67	92.67
KRG96883	Soybean	endoplasmic reticulum, nucleus	92.67	92.67
KRG96881	Soybean	cytosol	92.67	92.67
KRH11201	Soybean	nucleus	92.0	92.0
Bra001406.1-P	Field mustard	cytosol	92.0	92.0
Bra002045.1-P	Field mustard	cytosol	93.33	86.42
Zm00001d036568_P001	Maize	cytosol, mitochondrion	97.33	85.38
KRH68609	Soybean	cytosol	92.67	83.73
Zm00001d046583_P001	Maize	endoplasmic reticulum	97.33	81.11
Zm00001d014462_P002	Maize	cytosol	80.67	75.62
KXG20642	Sorghum	cytosol	77.33	72.96
VIT_06s0080g00740.t01	Wine grape	cytosol	82.0	67.21
Zm00001d036565_P002	Maize	cytosol	88.67	64.56
Zm00001d036567_P002	Maize	cytosol	87.33	60.65

Protein Annotations

MapMan:17.1.3.1.15	Gene3D:3.30.420.80	EntrezGene:4328392	EMBL:AK058907	EMBL:AK121223	ProteinID:BAD25218.1
ProteinID:BAF07896.1	ProteinID:BAS77123.1	ProteinID:EEE56358.1	GO:GO:0000028	GO:GO:0000462	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0022627	GO:GO:0048027	GO:GO:0070181	InterPro:IPR036967	HAMAP:MF_01310
EnsemblPlantsGene:Os02g0162500	EnsemblPlants:Os02t0162500-01	PFAM:PF00411	PIRSF:PIRSF002131	ScanProsite:PS00054	PANTHER:PTHR11759
PANTHER:PTHR11759:SF11	UniProt:Q6H7T1	InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_CS	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137
UniParc:UPI00003B43C2	RefSeq:XP_015627679.1	SEG:seg	:	:	:

Description

Similar to 40S ribosomal protein S14. (Os02t0162500-01)

Coordinates

chr2:-:3358928..3360718

Molecular Weight (calculated)

16363.8 Da

IEP (calculated)

11.128

GRAVY (calculated)

-0.580

Length

150 amino acids

Sequence
(BLAST)

001: MSKRKTREPK EENVTLGPTV REGEYVFGVA HIFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLASQDV AQRCKELGIT ALHIKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPVPTDSTR RKGGRRGRRL

Best Arabidopsis Sequence Match ( AT3G52580.1 )
(BLAST)

001: MSKRKTKEPK VENVTLGPAV REGEQVFGVV HVFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AIHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Arabidopsis Description

RPS14C40S ribosomal protein S14-3 [Source:UniProtKB/Swiss-Prot;Acc:P42036]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.