CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G073150.1	Barley	cytosol	52.51	62.25
TraesCS2D01G293400.1	Wheat	cytosol, golgi, unclear	51.96	61.59
TraesCS2D01G293300.1	Wheat	cytosol	51.96	61.59
TraesCS2B01G312000.1	Wheat	cytosol	51.96	61.59
TraesCS2A01G295600.1	Wheat	cytosol	51.96	61.59
Os04t0413600-01	Rice	cytosol, nucleus	51.96	61.59
EER88715	Sorghum	cytosol	50.84	60.67
EES12290	Sorghum	cytosol	50.84	60.67
EER88707	Sorghum	cytosol	50.84	60.67
Zm00001d000120_P003	Maize	mitochondrion	53.63	57.83
GSMUA_Achr6P06980_001	Banana	cytosol	48.6	56.86
GSMUA_Achr9P02560_001	Banana	mitochondrion	54.75	53.26
HORVU0Hr1G004130.1	Barley	plastid	54.19	51.87
GSMUA_AchrUn_...	Banana	cytosol	53.07	51.63
GSMUA_Achr9P02230_001	Banana	mitochondrion	52.51	50.54
KXG20642	Sorghum	cytosol	43.58	49.06
GSMUA_Achr2P20380_001	Banana	mitochondrion	52.51	40.0

Protein Annotations

Gene3D:3.30.420.80	MapMan:35.1	UniProt:A0A1Z5RN92	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036967
EnsemblPlants:OQU85061	ProteinID:OQU85061	ProteinID:OQU85061.1	PFAM:PF00411	PANTHER:PTHR11759	PANTHER:PTHR11759:SF11
InterPro:Ribosomal_S11	InterPro:Ribosomal_S11_sf	EnsemblPlantsGene:SORBI_3004G166800	SUPFAM:SSF53137	UniParc:UPI000B8BB0C9	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:51686684..51690293

Molecular Weight (calculated)

19674.9 Da

IEP (calculated)

10.881

GRAVY (calculated)

-0.356

Length

179 amino acids

Sequence
(BLAST)

001: MGMVASDMSK CKLGYNDQCM TCSAMEVGGG RRRGAQSRRK KTREPKEENV TLDPAVRRAA EHVFGVAHIF ASFNDTFIHV TDLSGRETLV PSSLDVAQRC
101: KELGITALHI KLCATGGNKT KTPGPGCYSI QSPLTATRRK GGRRGRRLQL QVSWRPVRCS GSSLSASNIL LLRKFFVLY

Best Arabidopsis Sequence Match ( AT3G52580.1 )
(BLAST)

001: MSKRKTKEPK VENVTLGPAV REGEQVFGVV HVFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AIHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Arabidopsis Description

RPS14C40S ribosomal protein S14-3 [Source:UniProtKB/Swiss-Prot;Acc:P42036]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.