Factsheet for TraesCS2D01G293400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, unclear, golgi

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G295600.1	Wheat	cytosol	100.0	100.0
TraesCS2B01G312000.1	Wheat	cytosol	100.0	100.0
TraesCS2D01G293300.1	Wheat	cytosol	100.0	100.0
HORVU2Hr1G073150.1	Barley	cytosol	99.34	99.34
Os04t0413600-01	Rice	cytosol, nucleus	97.35	97.35
TraesCS6D01G126300.1	Wheat	cytosol	94.7	95.33
Zm00001d000120_P003	Maize	mitochondrion	98.01	89.16
GSMUA_Achr6P06980_001	Banana	cytosol	89.4	88.24
HORVU0Hr1G004130.1	Barley	plastid	100.0	80.75
GSMUA_Achr9P02560_001	Banana	mitochondrion	96.03	78.8
GSMUA_AchrUn_...	Banana	cytosol	96.03	78.8
GSMUA_Achr9P02230_001	Banana	mitochondrion	96.03	77.96
GSMUA_Achr2P20380_001	Banana	mitochondrion	96.69	62.13
OQU85061	Sorghum	cytosol, nucleus, plastid	61.59	51.96

Protein Annotations

MapMan:17.1.3.1.15	Gene3D:3.30.420.80	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036967	HAMAP:MF_01310
PFAM:PF00411	PIRSF:PIRSF002131	ScanProsite:PS00054	PANTHER:PTHR11759	PANTHER:PTHR11759:SF11	InterPro:Ribosomal_S11
InterPro:Ribosomal_S11_CS	InterPro:Ribosomal_S11_sf	SUPFAM:SSF53137	EnsemblPlantsGene:TraesCS2D01G293400	EnsemblPlants:TraesCS2D01G293400.1	SEG:seg

Description

No Description!

Coordinates

chr2D:-:375625139..375627968

Molecular Weight (calculated)

16319.8 Da

IEP (calculated)

11.257

GRAVY (calculated)

-0.507

Length

151 amino acids

Sequence
(BLAST)

001: MSGRKKTREP KEENVTLGPA VREGEHVFGV AHIFASFNDT FIHVTDLSGR ETLVRITGGM KVKADRDESS PYAAMLASQD VAVRCKELGI TALHIKLRAT
101: GGNKTKTPGP GAQAALRALA RSGMKIGRIE DVTPVPTDST RRKGGRRGRR L

Best Arabidopsis Sequence Match ( AT3G52580.1 )
(BLAST)

001: MSKRKTKEPK VENVTLGPAV REGEQVFGVV HVFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AIHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL

Arabidopsis Description

RPS14C40S ribosomal protein S14-3 [Source:UniProtKB/Swiss-Prot;Acc:P42036]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.