Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d052553_P001 | Maize | cytosol | 41.23 | 41.96 |
| VIT_11s0103g00410.t01 | Wine grape | cytosol | 35.09 | 40.4 |
| Zm00001d000104_P001 | Maize | cytosol | 37.72 | 38.39 |
| VIT_08s0007g03020.t01 | Wine grape | cytosol | 54.39 | 38.04 |
| VIT_06s0080g00740.t01 | Wine grape | cytosol | 50.88 | 31.69 |
| HORVU1Hr1G076240.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 19.3 | 31.43 |
| HORVU1Hr1G058980.1 | Barley | cytosol | 18.42 | 27.63 |
| HORVU7Hr1G091030.1 | Barley | cytosol | 17.54 | 26.32 |
| VIT_17s0000g10400.t01 | Wine grape | nucleus | 7.02 | 12.31 |
| HORVU6Hr1G026350.1 | Barley | cytosol | 12.28 | 12.28 |
| HORVU6Hr1G085630.1 | Barley | cytosol, nucleus | 3.51 | 9.52 |
Protein Annotations
| Gene3D:3.30.420.80 | MapMan:35.1 | ProteinID:CBI14858 | ProteinID:CBI14858.3 | UniProt:D7SH99 | EMBL:FN594950 |
| GO:GO:0000028 | GO:GO:0000462 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019538 | GO:GO:0022627 | GO:GO:0048027 |
| GO:GO:0070181 | InterPro:IPR036967 | PFAM:PF00411 | PANTHER:PTHR11759 | PANTHER:PTHR11759:SF19 | InterPro:Ribosomal_S11 |
| InterPro:Ribosomal_S11_sf | SUPFAM:SSF53137 | UniParc:UPI0001BE0BB4 | ArrayExpress:VIT_17s0000g10380 | EnsemblPlantsGene:VIT_17s0000g10380 | EnsemblPlants:VIT_17s0000g10380.t01 |
Description
No Description!
Coordinates
chr17:-:12706475..12706819
Molecular Weight (calculated)
12379.7 Da
IEP (calculated)
6.917
GRAVY (calculated)
-0.406
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKMQPLDLL ETLVRTTGGM KEKTDGEESS PCAAMPAAQD VSQECKELDI TVLHVKLHAA RGNKTKTPGP GAQSALQAPC SFWNENVAVT PFPTHSSLFS
101: FTCRHPKTFS QAFS
101: FTCRHPKTFS QAFS
001: MSKRKTKEPK VDVVTLGPSV REGEQVFGVV HIFASFNDTF IHVTDLSGRE TLVRITGGMK VKADRDESSP YAAMLAAQDV AQRCKELGIT AMHVKLRATG
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL
101: GNKTKTPGPG AQSALRALAR SGMKIGRIED VTPIPTDSTR RKGGRRGRRL
Arabidopsis Description
RPS14A40S ribosomal protein S14-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIH0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.