Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX73851 | Canola | cytosol | 99.4 | 99.1 |
| Bra001422.1-P | Field mustard | cytosol | 99.1 | 99.1 |
| CDY01061 | Canola | cytosol, plastid | 91.29 | 90.75 |
| CDY08492 | Canola | cytosol | 91.29 | 89.68 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 91.29 | 87.86 |
| KRH32861 | Soybean | mitochondrion | 72.07 | 72.29 |
| Solyc01g006950.2.1 | Tomato | nucleus | 64.86 | 72.0 |
| PGSC0003DMT400072325 | Potato | cytosol | 64.56 | 71.19 |
| PGSC0003DMT400054965 | Potato | cytosol | 63.96 | 71.0 |
| Solyc10g081850.1.1 | Tomato | cytosol | 64.56 | 70.96 |
| KRH72169 | Soybean | cytosol | 71.17 | 70.75 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 67.57 | 69.44 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 54.95 | 66.79 |
| CDY23212 | Canola | cytosol | 68.47 | 66.47 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 65.17 | 64.97 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 65.47 | 64.88 |
| CDX95336 | Canola | cytosol | 19.82 | 62.86 |
| EER93336 | Sorghum | cytosol | 56.46 | 61.24 |
| CDY34843 | Canola | cytosol | 54.65 | 61.07 |
| Zm00001d034365_P001 | Maize | plasma membrane | 55.86 | 60.78 |
| CDY20986 | Canola | cytosol | 54.35 | 60.74 |
| CDY34656 | Canola | cytosol | 54.35 | 60.74 |
| CDX97943 | Canola | cytosol | 54.05 | 60.4 |
| CDY70107 | Canola | cytosol | 54.05 | 60.4 |
| CDY19350 | Canola | cytosol | 53.75 | 60.07 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 56.16 | 58.99 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 56.76 | 58.88 |
| Os03t0787000-01 | Rice | plasma membrane | 58.26 | 58.79 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 56.16 | 58.44 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 54.35 | 58.2 |
| CDY21160 | Canola | cytosol | 22.82 | 57.14 |
| CDY21958 | Canola | cytosol | 52.25 | 57.05 |
| CDY48554 | Canola | cytosol | 51.95 | 56.72 |
| CDY51747 | Canola | cytosol | 22.22 | 54.81 |
| CDY50666 | Canola | cytosol | 21.92 | 54.07 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 40.84 | 53.33 |
| Zm00001d013115_P001 | Maize | cytosol | 19.82 | 45.21 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 39.34 | 44.86 |
| CDY29963 | Canola | cytosol | 41.74 | 44.84 |
| CDX97497 | Canola | cytosol | 39.64 | 43.56 |
| CDX93553 | Canola | cytosol | 39.94 | 43.32 |
| CDX95050 | Canola | cytosol | 39.64 | 43.0 |
| CDY31137 | Canola | cytosol | 39.04 | 42.76 |
| CDY25157 | Canola | cytosol | 23.42 | 38.61 |
| CDY51748 | Canola | cytosol | 20.12 | 37.85 |
| CDY50665 | Canola | cytosol | 19.22 | 36.78 |
| CDY46302 | Canola | cytosol | 31.23 | 36.11 |
| CDY20921 | Canola | cytosol | 30.33 | 35.31 |
| CDY21161 | Canola | cytosol | 18.92 | 35.2 |
| CDY29223 | Canola | cytosol | 30.33 | 35.19 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 15.62 | 33.55 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | GO:A0A078JTQ4 | UniProt:A0A078JTQ4 | EnsemblPlants:CDY70958 |
| ProteinID:CDY70958 | ProteinID:CDY70958.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 |
| GO:GO:0061025 | EnsemblPlantsGene:GSBRNA2T00008785001 | InterPro:IPR000727 | PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 |
| PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE |
| SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0004EDBC90 |
| SEG:seg | : | : | : | : | : |
Description
BnaC03g73490DBnaC03g73490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JTQ4]
Coordinates
chrLK043908:-:1119..2803
Molecular Weight (calculated)
36700.6 Da
IEP (calculated)
9.665
GRAVY (calculated)
-0.547
Length
333 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLFSSSFS RFRSSGDAGG GGGGVQMTHP AGVNLDKFFE DVESVKEELK ELDRLNDTLR SSHEHSKTLH NAEAVKDLRS KMDADVGVAL KKAKMIKVKL
101: EALDRSNAAN RSLPGCGPGS SSDRTRTSVL NGLRKKLKDS MDSFNRLREL ISSEYRDTVQ RRYFTVTGEN PDERTLDRLI STGESERFLQ KAIQEQGRGR
201: VLDTINEIQE RHDAVKDIEK NLRELHQVFL DMAVLVEHQG AQLDDIESHV GRASSFIRGG TEQLQTARVY QKNTRKWTCI AILILIIIIV VVVLAVVKPW
301: NSGGGGGGGG GGQPTSGQGS PPNPPQARRL LLR
101: EALDRSNAAN RSLPGCGPGS SSDRTRTSVL NGLRKKLKDS MDSFNRLREL ISSEYRDTVQ RRYFTVTGEN PDERTLDRLI STGESERFLQ KAIQEQGRGR
201: VLDTINEIQE RHDAVKDIEK NLRELHQVFL DMAVLVEHQG AQLDDIESHV GRASSFIRGG TEQLQTARVY QKNTRKWTCI AILILIIIIV VVVLAVVKPW
301: NSGGGGGGGG GGQPTSGQGS PPNPPQARRL LLR
001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
Arabidopsis Description
SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.