Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90604 | Canola | cytosol, golgi, nucleus | 97.32 | 97.9 |
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 89.29 | 97.4 |
| CDY23212 | Canola | cytosol | 87.2 | 85.42 |
| CDX95336 | Canola | cytosol | 24.11 | 77.14 |
| AT3G52400.1 | Thale cress | cytosol | 78.27 | 77.13 |
| CDY70958 | Canola | cytosol | 64.88 | 65.47 |
| CDX73851 | Canola | cytosol | 64.88 | 65.27 |
| CDY01061 | Canola | cytosol, plastid | 64.29 | 64.48 |
| CDY08492 | Canola | cytosol | 63.99 | 63.42 |
| KRH32861 | Soybean | mitochondrion | 62.5 | 63.25 |
| KRH72169 | Soybean | cytosol | 62.2 | 62.39 |
| PGSC0003DMT400054965 | Potato | cytosol | 55.65 | 62.33 |
| Solyc01g006950.2.1 | Tomato | nucleus | 55.36 | 62.0 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 57.74 | 59.88 |
| Solyc10g081850.1.1 | Tomato | cytosol | 53.87 | 59.74 |
| PGSC0003DMT400072325 | Potato | cytosol | 53.27 | 59.27 |
| CDY21160 | Canola | cytosol | 22.02 | 55.64 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 45.24 | 55.47 |
| CDY51747 | Canola | cytosol | 22.02 | 54.81 |
| CDY50666 | Canola | cytosol | 21.73 | 54.07 |
| CDY34656 | Canola | cytosol | 47.02 | 53.02 |
| CDY20986 | Canola | cytosol | 46.73 | 52.68 |
| CDY19350 | Canola | cytosol | 46.43 | 52.35 |
| CDY34843 | Canola | cytosol | 46.43 | 52.35 |
| CDX97943 | Canola | cytosol | 46.43 | 52.35 |
| CDY70107 | Canola | cytosol | 46.43 | 52.35 |
| EER93336 | Sorghum | cytosol | 45.83 | 50.16 |
| Zm00001d034365_P001 | Maize | plasma membrane | 45.54 | 50.0 |
| CDY48554 | Canola | cytosol | 45.24 | 49.84 |
| Os03t0787000-01 | Rice | plasma membrane | 48.81 | 49.7 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 46.73 | 49.53 |
| CDY21958 | Canola | cytosol | 44.94 | 49.51 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 45.24 | 48.87 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 46.43 | 48.75 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 46.13 | 48.29 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 33.93 | 44.71 |
| CDY29963 | Canola | cytosol | 41.07 | 44.52 |
| CDY31137 | Canola | cytosol | 35.42 | 39.14 |
| CDX97497 | Canola | cytosol | 35.12 | 38.94 |
| CDX93553 | Canola | cytosol | 34.82 | 38.11 |
| CDX95050 | Canola | cytosol | 34.23 | 37.46 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 31.25 | 35.96 |
| Zm00001d013115_P001 | Maize | cytosol | 15.48 | 35.62 |
| CDY51748 | Canola | cytosol | 18.75 | 35.59 |
| CDY21161 | Canola | cytosol | 18.75 | 35.2 |
| CDY50665 | Canola | cytosol | 18.15 | 35.06 |
| CDY25157 | Canola | cytosol | 20.83 | 34.65 |
| CDY46302 | Canola | cytosol | 27.98 | 32.64 |
| CDY29223 | Canola | cytosol | 27.38 | 32.06 |
| CDY20921 | Canola | cytosol | 27.08 | 31.82 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 12.2 | 26.45 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | GO:A0A078GVC2 | UniProt:A0A078GVC2 | EnsemblPlants:CDY29079 |
| ProteinID:CDY29079 | ProteinID:CDY29079.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 |
| GO:GO:0061025 | EnsemblPlantsGene:GSBRNA2T00041824001 | InterPro:IPR000727 | PFAM:PF00804 | PFAM:PF05739 | ScanProsite:PS00914 |
| PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE |
| SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0004EC4CC8 |
| SEG:seg | : | : | : | : | : |
Description
BnaC07g32850DBnaC07g32850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVC2]
Coordinates
chrLK032229:-:463037..464445
Molecular Weight (calculated)
38048.2 Da
IEP (calculated)
8.469
GRAVY (calculated)
-0.677
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLLSRSFK RSVADDSSPP HSHTIEMPKA KYSDENNLDK FFLDVEEVNN DLKELDRLCH SLQVSHDKSK TLHNSKAVKE LKDKMDSDVS KALKTAKRVK
101: GNLQALDRSN EVNRSLPECG PGSSSDRQRM AVVNGLRKKL KDAMNHFMRV RETISTEYRD TIHRLYFTVT GENPDEDTVD HLISTGESET FLQKAIQEQG
201: RGRILDTINE IQERHDAVKD IEKSLNELHQ VFLDMAVLVQ SQGEQLDTIE DSLKRTNTII RSGADQLVKA RFYQKNTRKW TCYAVLILII IVVLVVLFTV
301: KPWENNNGGG GGGGSNRQAT PVQAQPPPSQ ARRLLR
101: GNLQALDRSN EVNRSLPECG PGSSSDRQRM AVVNGLRKKL KDAMNHFMRV RETISTEYRD TIHRLYFTVT GENPDEDTVD HLISTGESET FLQKAIQEQG
201: RGRILDTINE IQERHDAVKD IEKSLNELHQ VFLDMAVLVQ SQGEQLDTIE DSLKRTNTII RSGADQLVKA RFYQKNTRKW TCYAVLILII IVVLVVLFTV
301: KPWENNNGGG GGGGSNRQAT PVQAQPPPSQ ARRLLR
001: MNDLLSGSFK TSVADGSSPP HSHNIEMSKA KVSGGSCHGG NNLDTFFLDV EVVNEDLKEL DRLCHNLRSS NEQSKTLHNA NAVKELKKKM DADVTAALKT
101: ARRLKGNLEA LDRANEVNRS LPESGPGSSS DRQRTSVVNG LRKKLKDEME KFSRVRETIT NEYKETVGRM CFTVTGEYPD EATLERLIST GESETFLQKA
201: IQEQGRGRIL DTINEIQERH DAVKDIEKSL NELHQVFLDM AVLVEHQGAQ LDDIEGNVKR ANSLVRSGAD RLVKARFYQK NTRKWTCFAI LLLLIIVVLI
301: VVFTVKPWES NGGGGGGAPR QATPVQAQPP PPPAVNRRLL R
101: ARRLKGNLEA LDRANEVNRS LPESGPGSSS DRQRTSVVNG LRKKLKDEME KFSRVRETIT NEYKETVGRM CFTVTGEYPD EATLERLIST GESETFLQKA
201: IQEQGRGRIL DTINEIQERH DAVKDIEKSL NELHQVFLDM AVLVEHQGAQ LDDIEGNVKR ANSLVRSGAD RLVKARFYQK NTRKWTCFAI LLLLIIVVLI
301: VVFTVKPWES NGGGGGGAPR QATPVQAQPP PPPAVNRRLL R
Arabidopsis Description
SYP122Syntaxin-122 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVC2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.