Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033436.1-P | Field mustard | cytosol | 83.87 | 83.63 |
| CDY23212 | Canola | cytosol | 83.87 | 83.38 |
| CDX95336 | Canola | cytosol | 25.51 | 82.86 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 77.13 | 78.74 |
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 70.97 | 78.57 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 77.13 | 78.27 |
| KRH32861 | Soybean | mitochondrion | 63.34 | 65.06 |
| Solyc01g006950.2.1 | Tomato | nucleus | 56.89 | 64.67 |
| PGSC0003DMT400054965 | Potato | cytosol | 56.89 | 64.67 |
| KRH72169 | Soybean | cytosol | 63.34 | 64.48 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 63.64 | 62.72 |
| Solyc10g081850.1.1 | Tomato | cytosol | 54.84 | 61.72 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 48.97 | 60.95 |
| PGSC0003DMT400072325 | Potato | cytosol | 53.96 | 60.93 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 56.01 | 58.95 |
| AT1G61290.2 | Thale cress | cytosol | 49.56 | 55.78 |
| AT1G11250.1 | Thale cress | cytosol | 48.68 | 55.7 |
| EER93336 | Sorghum | cytosol | 48.68 | 54.07 |
| Zm00001d034365_P001 | Maize | plasma membrane | 48.39 | 53.92 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 48.97 | 52.68 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 47.51 | 52.09 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 48.68 | 51.88 |
| Os03t0787000-01 | Rice | plasma membrane | 50.15 | 51.82 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 48.68 | 51.71 |
| AT4G03330.1 | Thale cress | cytosol | 46.04 | 51.48 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 36.66 | 49.02 |
| AT3G03800.1 | Thale cress | cytosol | 42.23 | 47.06 |
| AT5G08080.3 | Thale cress | cytosol | 43.4 | 46.98 |
| AT1G08560.1 | Thale cress | cytosol | 36.07 | 39.68 |
| Zm00001d013115_P001 | Maize | cytosol | 16.72 | 39.04 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 32.55 | 38.01 |
| AT2G18260.1 | Thale cress | cytosol | 30.79 | 34.43 |
| HORVU5Hr1G103620.1 | Barley | cytosol | 12.61 | 27.74 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | EntrezGene:824405 | UniProt:A0A178VEE7 | ProteinID:AEE78943.1 |
| EMBL:AF083808 | EMBL:AJ245407 | ArrayExpress:AT3G52400 | EnsemblPlantsGene:AT3G52400 | RefSeq:AT3G52400 | TAIR:AT3G52400 |
| RefSeq:AT3G52400-TAIR-G | EnsemblPlants:AT3G52400.1 | TAIR:AT3G52400.1 | EMBL:AY050907 | EMBL:AY087633 | EMBL:AY091410 |
| ProteinID:CAB43444.1 | ncoils:Coil | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 |
| GO:GO:0006612 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006887 | GO:GO:0006906 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009987 | GO:GO:0012505 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 | GO:GO:0016192 | GO:GO:0031201 |
| GO:GO:0048278 | GO:GO:0050832 | GO:GO:0061025 | InterPro:IPR000727 | RefSeq:NP_190808.1 | ProteinID:OAP03313.1 |
| PFAM:PF00804 | PFAM:PF05739 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00914 |
| PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | UniProt:Q9SVC2 | SMART:SM00397 | SMART:SM00503 |
| InterPro:SNARE | SUPFAM:SSF47661 | Symbol:SYP122 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | UniParc:UPI0000135419 | SEG:seg | : | : | : |
Description
SYP122Syntaxin-122 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVC2]
Coordinates
chr3:-:19425632..19427230
Molecular Weight (calculated)
37839.1 Da
IEP (calculated)
8.625
GRAVY (calculated)
-0.544
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MNDLLSGSFK TSVADGSSPP HSHNIEMSKA KVSGGSCHGG NNLDTFFLDV EVVNEDLKEL DRLCHNLRSS NEQSKTLHNA NAVKELKKKM DADVTAALKT
101: ARRLKGNLEA LDRANEVNRS LPESGPGSSS DRQRTSVVNG LRKKLKDEME KFSRVRETIT NEYKETVGRM CFTVTGEYPD EATLERLIST GESETFLQKA
201: IQEQGRGRIL DTINEIQERH DAVKDIEKSL NELHQVFLDM AVLVEHQGAQ LDDIEGNVKR ANSLVRSGAD RLVKARFYQK NTRKWTCFAI LLLLIIVVLI
301: VVFTVKPWES NGGGGGGAPR QATPVQAQPP PPPAVNRRLL R
101: ARRLKGNLEA LDRANEVNRS LPESGPGSSS DRQRTSVVNG LRKKLKDEME KFSRVRETIT NEYKETVGRM CFTVTGEYPD EATLERLIST GESETFLQKA
201: IQEQGRGRIL DTINEIQERH DAVKDIEKSL NELHQVFLDM AVLVEHQGAQ LDDIEGNVKR ANSLVRSGAD RLVKARFYQK NTRKWTCFAI LLLLIIVVLI
301: VVFTVKPWES NGGGGGGAPR QATPVQAQPP PPPAVNRRLL R
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.