Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G103620.1 | Barley | cytosol | 60.27 | 56.77 |
| Zm00001d034365_P001 | Maize | plasma membrane | 75.34 | 35.95 |
| EER93336 | Sorghum | cytosol | 71.92 | 34.2 |
| Os03t0787000-01 | Rice | plasma membrane | 72.6 | 32.12 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 63.7 | 31.85 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 68.49 | 31.55 |
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 68.49 | 31.25 |
| TraesCSU01G076400.1 | Wheat | cytosol, golgi, nucleus | 68.49 | 31.15 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 50.0 | 26.64 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 53.42 | 25.08 |
| PGSC0003DMT400054965 | Potato | cytosol | 46.58 | 22.67 |
| Solyc01g006950.2.1 | Tomato | nucleus | 46.58 | 22.67 |
| KRH32862 | Soybean | cytosol | 47.26 | 22.55 |
| PGSC0003DMT400072325 | Potato | cytosol | 46.58 | 22.52 |
| KRH72168 | Soybean | cytosol | 45.89 | 21.97 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 48.63 | 21.91 |
| Solyc10g081850.1.1 | Tomato | cytosol | 45.21 | 21.78 |
| KRH72169 | Soybean | cytosol | 46.58 | 20.3 |
| KRG96271 | Soybean | cytosol, golgi, mitochondrion | 41.1 | 19.93 |
| CDY70958 | Canola | cytosol | 45.21 | 19.82 |
| Bra001422.1-P | Field mustard | cytosol | 45.21 | 19.82 |
| CDX73851 | Canola | cytosol | 45.21 | 19.76 |
| KRH68016 | Soybean | cytosol | 39.73 | 19.73 |
| KRH32861 | Soybean | mitochondrion | 44.52 | 19.58 |
| Zm00001d053607_P001 | Maize | cytosol | 41.1 | 19.17 |
| Zm00001d036931_P001 | Maize | cytosol | 40.41 | 19.09 |
| Bra034808.1-P | Field mustard | cytosol, nucleus, plastid | 42.47 | 19.08 |
| Zm00001d046482_P001 | Maize | cytosol | 39.73 | 18.77 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 43.84 | 18.5 |
| CDY08492 | Canola | cytosol | 42.47 | 18.29 |
| CDY01061 | Canola | cytosol, plastid | 41.78 | 18.21 |
| AT3G52400.1 | Thale cress | cytosol | 39.04 | 16.72 |
| Bra033436.1-P | Field mustard | cytosol | 37.67 | 16.08 |
| CDY23212 | Canola | cytosol | 37.67 | 16.04 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 36.3 | 15.87 |
| Zm00001d033919_P001 | Maize | plasma membrane | 33.56 | 15.65 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 35.62 | 15.48 |
| Zm00001d013323_P001 | Maize | cytosol | 32.88 | 15.29 |
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 29.45 | 13.96 |
| CDX95336 | Canola | cytosol | 9.59 | 13.33 |
| Zm00001d041716_P002 | Maize | cytosol | 28.08 | 12.93 |
| Zm00001d007902_P001 | Maize | mitochondrion, plasma membrane | 26.71 | 12.83 |
| Zm00001d021664_P001 | Maize | cytosol | 30.82 | 12.64 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 20.55 | 11.76 |
| Zm00001d018867_P002 | Maize | plastid | 28.08 | 10.49 |
| Zm00001d035331_P001 | Maize | cytosol | 19.18 | 9.4 |
Protein Annotations
| EnsemblPlants:Zm00001d013115_P001 | EnsemblPlants:Zm00001d013115_T001 | EnsemblPlantsGene:Zm00001d013115 | Gene3D:1.20.58.70 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR000727 | InterPro:Syntaxin_N | InterPro:T_SNARE_dom | ncoils:Coil | PANTHER:PTHR19957 |
| PANTHER:PTHR19957:SF69 | PFAM:PF00804 | PFAM:PF05739 | ProteinID:AQK62502.1 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI00084325EB | UniProt:A0A1D6GG22 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5:-:4880976..4881416
Molecular Weight (calculated)
15786.3 Da
IEP (calculated)
8.549
GRAVY (calculated)
0.099
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPAAMNSLF SSSWKRGVGD GGDIESGGVE MSALLPGAAA GASLDRLFED VESIKDELRD LERIQRSLHD ANEGGKSLHA AAAVRNLRTR MDADVAAAIE
101: KAKVVKHRLE SLQVARKHHT STRKWICIAI LILLLVILVI VLPIVS
101: KAKVVKHRLE SLQVARKHHT STRKWICIAI LILLLVILVI VLPIVS
001: MNDLFSNSFK KNQAQLGDVE AGQETMNLDK FFEDVENVKD DMKGVEALYK KLQDSNEECK TVHNAKKVKE LRAKMDGDVA MVLKRVKIIK QKLEALEKAN
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK
101: ANSRNVPGCG PGSSTDRTRS SVVSGLGKKL KDLMDSFQGL RARMNNEYKE TVERRYFTIT GEKADEQTID NLIASGESEN FLQKAIQEQG RGQILDTISE
201: IQERHDAVKE IEKNLLELHQ VFLDMAALVE AQGQQLNNIE SHVAKASSFV RRGTDQLQDA REYQKSSRKW TCYAIILFIV IFILLLIPLL PHIMLMLK
Arabidopsis Description
SYP125Syntaxin-125 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXB0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.