Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G427600.1 | Wheat | cytosol, golgi, nucleus | 99.07 | 99.38 |
| TraesCS5A01G425600.1 | Wheat | cytosol, nucleus, plastid | 96.26 | 97.48 |
| EER93336 | Sorghum | cytosol | 85.98 | 89.9 |
| Zm00001d034365_P001 | Maize | plasma membrane | 85.67 | 89.87 |
| Os03t0787000-01 | Rice | plasma membrane | 85.36 | 83.03 |
| HORVU5Hr1G103590.1 | Barley | cytosol, mitochondrion | 64.17 | 80.78 |
| GSMUA_Achr6P31140_001 | Banana | cytosol | 64.17 | 75.18 |
| GSMUA_Achr8P03020_001 | Banana | cytosol | 69.78 | 72.03 |
| Zm00001d013115_P001 | Maize | cytosol | 31.15 | 68.49 |
| Zm00001d013114_P001 | Maize | cytosol, plastid | 55.45 | 60.96 |
| PGSC0003DMT400072325 | Potato | cytosol | 57.32 | 60.93 |
| Solyc10g081850.1.1 | Tomato | cytosol | 57.32 | 60.73 |
| Solyc01g006950.2.1 | Tomato | nucleus | 55.76 | 59.67 |
| VIT_08s0032g01150.t01 | Wine grape | cytosol | 60.12 | 59.57 |
| PGSC0003DMT400054965 | Potato | cytosol | 55.14 | 59.0 |
| KRH32862 | Soybean | cytosol | 55.45 | 58.17 |
| KRH72168 | Soybean | cytosol | 54.52 | 57.38 |
| CDY70958 | Canola | cytosol | 58.88 | 56.76 |
| Bra001422.1-P | Field mustard | cytosol | 58.88 | 56.76 |
| CDX73851 | Canola | cytosol | 58.88 | 56.59 |
| KRH72169 | Soybean | cytosol | 57.63 | 55.22 |
| KRH32861 | Soybean | mitochondrion | 56.39 | 54.52 |
| CDY01061 | Canola | cytosol, plastid | 56.07 | 53.73 |
| AT3G11820.1 | Thale cress | cytosol, nucleus, plastid | 57.63 | 53.47 |
| CDY08492 | Canola | cytosol | 55.76 | 52.8 |
| KRH68016 | Soybean | cytosol | 47.98 | 52.38 |
| Bra034808.1-P | Field mustard | cytosol, nucleus, plastid | 52.96 | 52.31 |
| KRG96271 | Soybean | cytosol, golgi, mitochondrion | 47.98 | 51.16 |
| AT3G52400.1 | Thale cress | cytosol | 51.71 | 48.68 |
| Bra033436.1-P | Field mustard | cytosol | 50.47 | 47.37 |
| CDY23212 | Canola | cytosol | 50.47 | 47.23 |
| Bra012806.1-P | Field mustard | cytosol, nucleus, peroxisome | 44.86 | 46.75 |
| CDX90604 | Canola | cytosol, golgi, nucleus | 48.29 | 46.41 |
| CDY29079 | Canola | cytosol, golgi, nucleus | 48.29 | 46.13 |
| CDX95336 | Canola | cytosol | 11.21 | 34.29 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016192 | InterPro:IPR000727 | PFAM:PF00804 |
| PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF69 | SMART:SM00397 |
| SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TMHMM:TMhelix |
| InterPro:T_SNARE_dom | EnsemblPlantsGene:TraesCSU01G076400 | EnsemblPlants:TraesCSU01G076400.1 | TIGR:cd00179 | TIGR:cd15848 | SEG:seg |
Description
No Description!
Coordinates
chrUn:+:68155127..68156092
Molecular Weight (calculated)
34666.0 Da
IEP (calculated)
8.246
GRAVY (calculated)
-0.418
Length
321 amino acids
Sequence
(BLAST)
(BLAST)
001: MNNLFSSSWK RAGAGGDGGD LESGGGGGGV EMTAPPGAAA GASLDRFFED VESIKDDLRE LERIQRSLHD GNESGKSLHD ASAVRALRSR MDADVAAAIK
101: KAKVVKLRLE SLDRANAANR SVAGCGPGSS TDRTRTSVVA GLRKKLRDAM ESFSSLRSRI TSEYRDTVAR RYFTVTGSQP DEATLDTLAE TGEGERFLQR
201: AIAEQQGRGE VLGVVAEIQE RHGAVADLER SLLELQQVFN DMAVLVAAQG EQLDDIEGHV GRARSFVDRG REQLQVARKH QKSSRKWTCI GIGILLVVIL
301: IIVIPIVLKN TNKSNNNNGQ Q
101: KAKVVKLRLE SLDRANAANR SVAGCGPGSS TDRTRTSVVA GLRKKLRDAM ESFSSLRSRI TSEYRDTVAR RYFTVTGSQP DEATLDTLAE TGEGERFLQR
201: AIAEQQGRGE VLGVVAEIQE RHGAVADLER SLLELQQVFN DMAVLVAAQG EQLDDIEGHV GRARSFVDRG REQLQVARKH QKSSRKWTCI GIGILLVVIL
301: IIVIPIVLKN TNKSNNNNGQ Q
001: MNDLFSSSFS RFRSGEPSPR RDVAGGGDGV QMANPAGSTG GVNLDKFFED VESVKEELKE LDRLNETLSS CHEQSKTLHN AKAVKDLRSK MDGDVGVALK
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
101: KAKMIKVKLE ALDRANAANR SLPGCGPGSS SDRTRTSVLN GLRKKLMDSM DSFNRLRELI SSEYRETVQR RYFTVTGENP DERTLDRLIS TGESERFLQK
201: AIQEQGRGRV LDTINEIQER HDAVKDIEKN LRELHQVFLD MAVLVEHQGA QLDDIESHVG RASSFIRGGT DQLQTARVYQ KNTRKWTCIA IIILIIIITV
301: VVLAVLKPWN NSSGGGGGGG GGGTTGGSQP NSGTPPNPPQ ARRLLR
Arabidopsis Description
SYP121SYR1 [Source:UniProtKB/TrEMBL;Acc:A0A178VIM4]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.