Factsheet for TraesCS3B01G274500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G267900.1
TraesCS1B01G278600.1
TraesCS1D01G267800.1
TraesCS3A01G233800.1
TraesCS3B01G265500.1
TraesCS3D01G219600.1
TraesCS6B01G081300.1
TraesCS7A01G428500.1
TraesCS7B01G328700.1
TraesCS7D01G420900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32650.1	TraesCS3A01G233800.1	AT2G26650.1	12678562
AT4G32650.1	TraesCS3B01G265500.1	AT2G26650.1	12678562
AT4G32650.1	TraesCS3D01G219600.1	AT2G26650.1	12678562
AT4G32650.1	TraesCS3A01G233800.1	AT2G26650.1	15299147
AT4G32650.1	TraesCS3B01G265500.1	AT2G26650.1	15299147
AT4G32650.1	TraesCS3D01G219600.1	AT2G26650.1	15299147
AT4G32650.1	TraesCS1A01G267900.1	AT4G22200.1	12678562
AT4G32650.1	TraesCS1B01G278600.1	AT4G22200.1	12678562
AT4G32650.1	TraesCS1D01G267800.1	AT4G22200.1	12678562
AT4G32650.1	TraesCS6B01G081300.1	AT4G22200.1	12678562
AT4G32650.1	TraesCS7A01G428500.1	AT5G14570.1	15299147
AT4G32650.1	TraesCS7B01G328700.1	AT5G14570.1	15299147
AT4G32650.1	TraesCS7D01G420900.1	AT5G14570.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G246300.1	Wheat	plastid	80.22	87.23
TraesCS3A01G245200.1	Wheat	mitochondrion	79.29	85.36
HORVU3Hr1G068040.1	Barley	plasma membrane	53.48	80.84
Os01t0718700-00	Rice	endoplasmic reticulum, plasma membrane	33.54	58.18
Os06t0254200-00	Rice	plasma membrane, plastid	48.53	51.48
Os04t0117500-00	Rice	plasma membrane	20.71	46.85
GSMUA_Achr1P05260_001	Banana	plasma membrane	45.44	46.45
OQU87429	Sorghum	mitochondrion	44.67	46.24
Zm00001d011723_P002	Maize	cytosol, plasma membrane, plastid	45.13	45.62
VIT_04s0008g04510.t01	Wine grape	cytosol, mitochondrion, peroxisome, plasma membrane	42.81	43.9
GSMUA_Achr5P09770_001	Banana	plasma membrane	44.05	43.64
Zm00001d011729_P002	Maize	cytosol	42.66	43.6
Solyc01g010080.2.1	Tomato	plastid	41.42	42.68
PGSC0003DMT400065964	Potato	cytosol, plastid	41.11	42.16
Zm00001d016987_P001	Maize	plasma membrane	38.02	41.77
PGSC0003DMT400037608	Potato	plastid	40.19	41.73
KRH61886	Soybean	plasma membrane	38.95	40.32
Solyc08g068000.1.1	Tomato	plasma membrane	40.03	40.28
EES07044	Sorghum	cytosol, mitochondrion, peroxisome, plasma membrane	37.4	40.27
Bra037049.1-P	Field mustard	plastid	38.79	38.91
CDX72366	Canola	plastid	38.79	38.91
Bra011367.1-P	Field mustard	plastid	38.95	38.71
CDX68872	Canola	plastid	38.95	38.71
CDX75267	Canola	plastid	38.95	38.71
CDY13496	Canola	plastid	38.95	38.41
AT4G32650.1	Thale cress	plastid	38.79	37.92
TraesCS3B01G328800.1	Wheat	plasma membrane	29.21	37.43
KRH52547	Soybean	cytosol	33.54	36.53
TraesCS6B01G190900.1	Wheat	plasma membrane	33.38	29.79
TraesCS3B01G167100.1	Wheat	plasma membrane	31.07	27.96
TraesCS3B01G265500.1	Wheat	plasma membrane	35.86	25.86
TraesCS6B01G081300.1	Wheat	plastid	29.37	22.73
TraesCS1B01G278600.1	Wheat	plasma membrane, plastid	29.21	21.85
TraesCS7B01G106900.1	Wheat	cytosol, plasma membrane, vacuole	25.19	19.52
TraesCS2B01G329800.1	Wheat	plasma membrane	21.79	19.5
TraesCS7B01G106800.1	Wheat	cytosol	16.38	18.03
TraesCS7B01G106600.1	Wheat	cytosol	19.32	17.03
CDY61287	Canola	plasma membrane	13.6	16.6
Bra021279.1-P	Field mustard	nucleus	12.52	14.16
CDY10020	Canola	cytosol	4.95	9.38

Protein Annotations

Gene3D:1.10.287.70	Gene3D:2.60.120.10	MapMan:24.3.2.2	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216
GO:GO:0005249	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783
GO:GO:0005886	GO:GO:0006810	GO:GO:0006811	GO:GO:0006813	GO:GO:0008150	GO:GO:0009605
GO:GO:0009607	GO:GO:0009624	GO:GO:0009987	GO:GO:0016020	GO:GO:0055085	GO:GO:0071805
InterPro:IPR000595	InterPro:IPR014710	InterPro:IPR021789	InterPro:Ion_trans_dom	InterPro:KHA_dom	InterPro:K_chnl_volt-dep_EAG/ELK/ERG
PFAM:PF00027	PFAM:PF00520	PFAM:PF11834	PRINTS:PR01463	PFscan:PS50042	PFscan:PS51490
PANTHER:PTHR10217	PANTHER:PTHR10217:SF537	InterPro:RmlC-like_jellyroll	SMART:SM00100	SUPFAM:SSF51206	SUPFAM:SSF81324
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3B01G274500	EnsemblPlants:TraesCS3B01G274500.1	InterPro:cNMP-bd-like	InterPro:cNMP-bd_dom	TIGR:cd00038
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:+:443348181..443356090

Molecular Weight (calculated)

71494.0 Da

IEP (calculated)

8.671

GRAVY (calculated)

-0.093

Length

647 amino acids

Sequence
(BLAST)

001: MAMAGVGSQR GSSSSSRMLL PRNISLSTGH LPEALGGVPP PLRPNVINPY GRPYRCARLD RLGMSTCYTR LNDGVDLDRR YWQMFLIVLV AYSAWASPFE
101: LALEKAASRA HLVVDLVVDV FFCADIVVSF FVAYRDRSTD LLVDDRSKIA ASHSSKNTRR RWPGSVSAPS GTGHGPASKR VCASATHAVS FKCHFHRTNS
201: QGHGHGQGQG SRPSLPPSPA AANAVPRHPA SPSSSSSTVA TQLEKDTRLS YFWTRFIKLF CVALFALHCA SCGYLWLAFH YRDKEQTWIG SLRGDFKERS
301: VWFAYTYAVY WSMTTMATVG YGDLHAANTG EKLFSILFML CNMGIACYVI GNMTNLVVHG ATTTFRMVAR YGKANRLPVW MREHMVESLQ LRFQMAELLM
401: PDEVLSELPK AARSAVAQHL YKAAVEDCYL FRGVSDNLVV QLVSEMKAEF FPPKMDIVLE NEIPTDCYII ASGQVDVLRT AKDDGLEKFV MRVGPHGMAG
501: DIGVMFNIPQ PFTIRSRTLT QVIRISRSHL QNTVRPATAD GDTIFSNFAQ YLESLKVRHG EELTFARDVG HDTLPFQNGD PVRVARDGGM AGNRAAGKLV
601: CLPGSLEELM KLGEDKFGMA ARHVLTADGA EVDDVRALRD GDHLFLS

Best Arabidopsis Sequence Match ( AT2G26650.1 )
(BLAST)

001: MRGGALLCGQ VQDEIEQLSR ESSHFSLSTG ILPSLGARSN RRVKLRRFVV SPYDHKYRIW EAFLVVLVVY TAWVSPFEFG FLRKPRPPLS ITDNIVNAFF
101: AIDIIMTFFV GYLDKSTYLI VDDRKQIAFK YLRSWFLLDL VSTIPSEAAM RISSQSYGLF NMLRLWRLRR VGALFARLEK DRNFNYFWVR CAKLVCVTLF
201: AVHCAACFYY LIAARNSNPA KTWIGANVAN FLEESLWMRY VTSMYWSITT LTTVGYGDLH PVNTKEMIFD IFYMLFNLGL TAYLIGNMTN LVVHGTSRTR
301: NFRDTIQAAS NFAHRNHLPP RLQDQMLAHL CLKYRTDSEG LQQQETLDAL PKAIRSSISH FLFYSLMDKV YLFRGVSNDL LFQLVSEMKA EYFPPKEDVI
401: LQNEAPTDFY ILVNGTADLV DVDTGTESIV REVKAGDIIG EIGVLCYRPQ LFTVRTKRLC QLLRMNRTTF LNIIQANVGD GTIIMNNLLQ HLKEMNDPVM
501: TNVLLEIENM LARGKMDLPL NLCFAAIRED DLLLHQLLKR GLDPNESDNN GRTPLHIAAS KGTLNCVLLL LEYHADPNCR DAEGSVPLWE AMVEGHEKVV
601: KVLLEHGSTI DAGDVGHFAC TAAEQGNLKL LKEIVLHGGD VTRPRATGTS ALHTAVCEEN IEMVKYLLEQ GADVNKQDMH GWTPRDLAEQ QGHEDIKALF
701: REKLHERRVH IETSSSVPIL KTGIRFLGRF TSEPNIRPAS REVSFRIRET RARRKTNNFD NSLFGILANQ SVPKNGLATV DEGRTGNPVR VTISCAEKDD
801: IAGKLVLLPG SFKELLELGS NKFGIVATKV MNKDNNAEID DVDVIRDGDH LIFATDS

Arabidopsis Description

AKT1Potassium channel AKT1 [Source:UniProtKB/Swiss-Prot;Acc:Q38998]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.