Factsheet for TraesCS7D01G420900.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	golgi, peroxisome, plasma membrane
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G245200.1
TraesCS3B01G274500.1
TraesCS3D01G246300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14570.1	TraesCS3A01G245200.1	AT4G32650.1	15299147
AT5G14570.1	TraesCS3B01G274500.1	AT4G32650.1	15299147
AT5G14570.1	TraesCS3D01G246300.1	AT4G32650.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G328700.1	Wheat	golgi, peroxisome, plasma membrane	98.34	97.74
HORVU7Hr1G098550.3	Barley	plasma membrane	95.03	95.03
TraesCS7A01G428500.1	Wheat	golgi, peroxisome, plasma membrane	84.06	86.75
Os01t0547600-01	Rice	plasma membrane	83.64	83.3
OQU87011	Sorghum	plasma membrane	80.12	79.96
Zm00001d044504_P001	Maize	plasma membrane	79.5	79.18
Zm00001d025783_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid, vacuole	30.02	75.13
Zm00001d016468_P001	Maize	plasma membrane	30.64	69.16
GSMUA_Achr1P25450_001	Banana	plasma membrane	54.45	56.56
VIT_14s0066g00850.t01	Wine grape	plasma membrane	47.0	49.89
PGSC0003DMT400017804	Potato	plasma membrane	43.48	49.53
Solyc02g067790.2.1	Tomato	golgi, peroxisome, plasma membrane	46.38	48.7
CDX85593	Canola	golgi, peroxisome, plasma membrane, plastid	45.96	45.87
AT5G14570.1	Thale cress	plastid	46.79	45.84
Bra023475.1-P	Field mustard	plastid	45.76	45.66
CDX91044	Canola	golgi, peroxisome, plasma membrane, plastid	46.17	44.42
TraesCS3D01G254900.1	Wheat	plasma membrane	44.1	41.44
TraesCS1D01G035700.1	Wheat	plasma membrane	43.69	40.73
TraesCS6D01G035800.1	Wheat	plasma membrane	38.72	36.88
TraesCS6D01G035900.1	Wheat	plasma membrane	38.72	36.88
TraesCS6D01G035700.1	Wheat	plasma membrane	38.72	36.88
TraesCS2D01G073500.1	Wheat	plasma membrane	37.89	36.67
TraesCS6D01G037200.1	Wheat	golgi, plasma membrane, plastid	38.51	36.61
TraesCS6D01G037300.1	Wheat	golgi, plasma membrane, plastid	38.3	36.42
TraesCS6D01G037900.1	Wheat	plasma membrane	38.1	36.15
TraesCS6D01G037800.1	Wheat	plasma membrane	37.89	36.09
TraesCS6D01G038000.1	Wheat	plasma membrane	37.89	36.09
TraesCS6D01G035600.1	Wheat	plasma membrane	37.68	35.76
TraesCS6D01G038200.1	Wheat	plasma membrane	37.47	35.63
TraesCS6D01G038100.1	Wheat	golgi, plasma membrane, vacuole	37.47	35.56
TraesCS6D01G038300.1	Wheat	plasma membrane	37.27	35.43

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.10	MapMan:25.1.3.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0008150
GO:GO:0009705	GO:GO:0015112	GO:GO:0015706	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
InterPro:IPR020846	InterPro:MFS	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF07690	ScanProsite:PS00216
PANTHER:PTHR23515	PANTHER:PTHR23515:SF5	SUPFAM:SSF103473	InterPro:Sugar_transporter_CS	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS7D01G420900
EnsemblPlants:TraesCS7D01G420900.1	TIGR:cd06174	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7D:+:540617172..540627528

Molecular Weight (calculated)

50470.5 Da

IEP (calculated)

7.610

GRAVY (calculated)

0.559

Length

483 amino acids

Sequence
(BLAST)

001: MVTMGKKVDQ EQSYYSDWAH IDHGVDADGR ATELRPLALS RPHTQAFHLA WLSLFACFFA AFAAPPILPA LRPALVLAPS DASAAAVASL SAALVGRLAM
101: GPACDLLGPR RASGVASLVC ALALALAAVY ASSPAGFVAL RFCAGLSLSN FVANQHWMSR IFAPSGVGLA NAVAAGWANV GSAAAQVVMP LAYDLIVLRL
201: GVPITVAWRV AYLIPCAMLI ATGLAVLAFP YDLPSGCTYA GGAKGEGFWK VVRGGVSDYR AWVLALTYGY CYGVELIMEN VAADFFRRRF RLPMEAAGAA
301: AACFGVMNTV ARPAGGVASD VVGRRFGMRG RLWALWAVQS TGAVLCVMVG RMGATEAPSL AATMAVMVAC GAFVQAASGL TFGIVPFVSK RSMGVVSGMT
401: ASGGAVGAIV TNRLFFSSSR YTVEEAISFT GLTSLLCTLP VALIYFPRLG GMLCGPSESD TVDHDGHDDD DDVNKDDDYM LLK

Best Arabidopsis Sequence Match ( AT1G08090.1 )
(BLAST)

001: MGDSTGEPGS SMHGVTGREQ SFAFSVQSPI VHTDKTAKFD LPVDTEHKAT VFKLFSFAKP HMRTFHLSWI SFSTCFVSTF AAAPLVPIIR ENLNLTKQDI
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
301: VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV
401: PFVSRRALGI ISGLTGAGGN FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE AHYYGSEWNE QEKQKNMHQG
501: SLRFAENAKS EGGRRVRSAA TPPENTPNNV

Arabidopsis Description

NRT2.1High-affinity nitrate transporter 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O82811]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.