Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G046500.1 | Wheat | plasma membrane | 98.03 | 98.03 |
| HORVU6Hr1G005780.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 88.95 | 97.83 |
| TraesCS6A01G032800.1 | Wheat | plasma membrane | 97.44 | 97.44 |
| TraesCS6D01G038200.1 | Wheat | plasma membrane | 93.29 | 93.11 |
| TraesCS6D01G038300.1 | Wheat | plasma membrane | 92.9 | 92.72 |
| TraesCS6D01G037900.1 | Wheat | plasma membrane | 92.5 | 92.14 |
| TraesCS6D01G037300.1 | Wheat | golgi, plasma membrane, plastid | 90.93 | 90.75 |
| TraesCS6D01G037200.1 | Wheat | golgi, plasma membrane, plastid | 90.53 | 90.35 |
| TraesCS6D01G038100.1 | Wheat | golgi, plasma membrane, vacuole | 90.53 | 90.18 |
| TraesCS6D01G038000.1 | Wheat | plasma membrane | 89.94 | 89.94 |
| TraesCS6D01G035800.1 | Wheat | plasma membrane | 81.66 | 81.66 |
| TraesCS6D01G035700.1 | Wheat | plasma membrane | 81.66 | 81.66 |
| TraesCS6D01G035900.1 | Wheat | plasma membrane | 81.46 | 81.46 |
| TraesCS6D01G035600.1 | Wheat | plasma membrane | 81.66 | 81.34 |
| Os02t0112600-01 | Rice | golgi, plasma membrane, plastid | 78.7 | 74.86 |
| Os02t0112100-01 | Rice | golgi, plasma membrane, plastid | 78.7 | 74.86 |
| Zm00001d054057_P001 | Maize | extracellular | 76.73 | 74.24 |
| Zm00001d054060_P001 | Maize | plastid | 76.53 | 74.05 |
| EES06135 | Sorghum | golgi, peroxisome, plasma membrane | 76.73 | 73.81 |
| EES04351 | Sorghum | golgi, peroxisome, plasma membrane | 76.73 | 73.81 |
| EES04350 | Sorghum | plastid | 76.73 | 72.71 |
| Zm00001d014976_P001 | Maize | plasma membrane | 73.96 | 71.84 |
| TraesCS2D01G073500.1 | Wheat | plasma membrane | 70.02 | 71.14 |
| PGSC0003DMT400050658 | Potato | plasma membrane | 58.97 | 68.89 |
| GSMUA_Achr8P14230_001 | Banana | golgi, peroxisome, plasma membrane | 66.86 | 67.53 |
| KRH26509 | Soybean | peroxisome | 70.02 | 66.98 |
| KRH30604 | Soybean | peroxisome | 69.82 | 66.79 |
| KRH22855 | Soybean | peroxisome | 69.82 | 66.79 |
| VIT_08s0040g01500.t01 | Wine grape | golgi, peroxisome, plasma membrane, plastid | 69.23 | 66.1 |
| GSMUA_Achr11P... | Banana | cytosol | 62.72 | 65.98 |
| Solyc11g069760.1.1 | Tomato | extracellular, plasma membrane | 23.67 | 65.57 |
| Solyc06g010250.2.1 | Tomato | plasma membrane | 64.1 | 65.26 |
| PGSC0003DMT400031306 | Potato | plasma membrane | 45.17 | 64.87 |
| VIT_06s0061g00320.t01 | Wine grape | peroxisome | 67.65 | 64.72 |
| PGSC0003DMT400050654 | Potato | plasma membrane | 66.86 | 64.57 |
| CDY32821 | Canola | cytosol, peroxisome, plasma membrane | 58.97 | 64.44 |
| PGSC0003DMT400092589 | Potato | plasma membrane | 67.65 | 64.23 |
| PGSC0003DMT400002924 | Potato | plasma membrane | 67.06 | 64.15 |
| Solyc11g069750.1.1 | Tomato | extracellular | 66.08 | 63.81 |
| AT5G60770.1 | Thale cress | plasma membrane | 66.27 | 63.76 |
| CDY72274 | Canola | plasma membrane | 44.38 | 63.74 |
| CDY22704 | Canola | cytosol, peroxisome, plasma membrane | 58.19 | 63.71 |
| VIT_06s0061g00310.t01 | Wine grape | plasma membrane | 31.16 | 63.45 |
| Bra030713.1-P | Field mustard | golgi, peroxisome, plasma membrane | 66.27 | 63.4 |
| PGSC0003DMT400031304 | Potato | plasma membrane | 66.27 | 63.4 |
| CDX93592 | Canola | golgi, peroxisome, plasma membrane | 57.4 | 63.26 |
| Bra018656.1-P | Field mustard | golgi, peroxisome, plasma membrane | 60.75 | 63.24 |
| CDY06299 | Canola | golgi, peroxisome, plasma membrane | 63.12 | 63.24 |
| Bra031611.1-P | Field mustard | golgi, peroxisome, plasma membrane | 63.12 | 63.24 |
| CDY06298 | Canola | golgi, peroxisome, plasma membrane | 52.47 | 63.18 |
| CDX93591 | Canola | golgi, peroxisome, plasma membrane | 57.79 | 63.15 |
| CDY68730 | Canola | endoplasmic reticulum, plasma membrane | 48.92 | 63.1 |
| CDY22703 | Canola | golgi, peroxisome, plasma membrane | 62.33 | 62.95 |
| AT1G08090.1 | Thale cress | cytosol, peroxisome, plasma membrane | 65.68 | 62.83 |
| Bra002453.1-P | Field mustard | golgi, peroxisome, plasma membrane, plastid | 65.29 | 62.81 |
| CDY70994 | Canola | golgi, plasma membrane | 43.59 | 62.61 |
| Bra031610.1-P | Field mustard | golgi, peroxisome, plasma membrane | 65.29 | 62.57 |
| Bra034142.1-P | Field mustard | plasma membrane | 18.93 | 62.34 |
| CDY31024 | Canola | endoplasmic reticulum, plasma membrane | 18.93 | 62.34 |
| AT5G60780.1 | Thale cress | peroxisome | 66.08 | 62.15 |
| KRH25078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 54.64 | 62.11 |
| PGSC0003DMT400040689 | Potato | plasma membrane | 63.91 | 61.83 |
| Bra038302.1-P | Field mustard | peroxisome | 65.48 | 61.71 |
| Bra018655.1-P | Field mustard | golgi, peroxisome, plasma membrane | 60.95 | 61.68 |
| AT3G45060.1 | Thale cress | peroxisome | 65.68 | 61.44 |
| Bra037625.1-P | Field mustard | peroxisome | 65.48 | 61.37 |
| Bra002451.1-P | Field mustard | golgi, peroxisome, plasma membrane | 64.3 | 60.82 |
| CDY69111 | Canola | peroxisome | 57.4 | 60.62 |
| Bra037626.1-P | Field mustard | peroxisome | 65.29 | 60.62 |
| CDY50324 | Canola | plasma membrane | 57.2 | 60.42 |
| Bra020230.1-P | Field mustard | peroxisome | 57.99 | 60.25 |
| AT1G08100.1 | Thale cress | cytosol, peroxisome, plasma membrane | 61.93 | 60.15 |
| Bra038301.1-P | Field mustard | golgi, peroxisome, plasma membrane | 63.91 | 59.67 |
| Solyc06g074990.1.1 | Tomato | plasma membrane | 60.75 | 58.56 |
| CDY31023 | Canola | endoplasmic reticulum, extracellular | 9.66 | 58.33 |
| CDY26984 | Canola | plasma membrane | 50.89 | 56.58 |
| CDX99169 | Canola | cytosol | 8.28 | 56.0 |
| CDY53125 | Canola | plastid | 20.32 | 55.98 |
| TraesCS3D01G254900.1 | Wheat | plasma membrane | 53.85 | 53.11 |
| TraesCS1D01G035700.1 | Wheat | plasma membrane | 53.25 | 52.12 |
| AT4G14358.1 | Thale cress | cytosol | 7.5 | 43.68 |
| Solyc11g069740.1.1 | Tomato | cytosol, peroxisome | 38.86 | 38.1 |
| TraesCS7D01G420900.1 | Wheat | golgi, peroxisome, plasma membrane | 36.09 | 37.89 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G037800.1 | EnsemblPlantsGene:TraesCS6D01G037800 | Gene3D:1.20.1250.20 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR020846 | InterPro:MFS | InterPro:MFS_dom |
| InterPro:MFS_trans_sf | PANTHER:PTHR23515 | PANTHER:PTHR23515:SF3 | PFAM:PF07690 | SEG:seg | SUPFAM:SSF103473 |
| TIGR:cd06174 | TMHMM:TMhelix | MapMan:24.2.2.10 | MapMan:25.1.3.1 | : | : |
Description
No Description!
Coordinates
chr6D:+:15658356..15659879
Molecular Weight (calculated)
54428.5 Da
IEP (calculated)
7.779
GRAVY (calculated)
0.402
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMEAGSMGD TVAGRFSLPV DSENKAKSIK IFSFGNPHMR AFHLGWMSFF TCVVSTFAAA PLIPIIRDNL NLTKADIGNA GVASVSGAIF SRLAMGAICD
101: LLGPRYGCAF LVMLSAPAVF CMSIIDGPAG YITIRFLIGV SLATFVSCQY WVSTMFNSKI IGTVGGLTAG WGDMGGGATQ LIMPLVFDAI IACGATPFTA
201: WRIAYFVPGL MLVVMGLLVL TTGQDLPDGN MRSLQKNGDM NKDKFSNVLR GAVTNYRTWI FVFIYGYCMG VELTTNNVIA EYYYDSFHLD LRAAGTIAAS
301: FGLANIFARP MGGYLSDLGA RYFGMRARLW NIWILQTAGG AFCLCLGRAS TLPTSITCMV LYSICVEAAC GAVYGVIPFV SRRSLGLISG MSGAGGNVGG
401: GLTQFLFFTS SQYSTGKGLQ YMGIMVMACT LPVALIHFPQ WGSMLLPPSA DATEEDYYGA EWTEEEKNKG LHIASLKFAE NSISERGRRN AILAAPTTPP
501: NNTPQHV
101: LLGPRYGCAF LVMLSAPAVF CMSIIDGPAG YITIRFLIGV SLATFVSCQY WVSTMFNSKI IGTVGGLTAG WGDMGGGATQ LIMPLVFDAI IACGATPFTA
201: WRIAYFVPGL MLVVMGLLVL TTGQDLPDGN MRSLQKNGDM NKDKFSNVLR GAVTNYRTWI FVFIYGYCMG VELTTNNVIA EYYYDSFHLD LRAAGTIAAS
301: FGLANIFARP MGGYLSDLGA RYFGMRARLW NIWILQTAGG AFCLCLGRAS TLPTSITCMV LYSICVEAAC GAVYGVIPFV SRRSLGLISG MSGAGGNVGG
401: GLTQFLFFTS SQYSTGKGLQ YMGIMVMACT LPVALIHFPQ WGSMLLPPSA DATEEDYYGA EWTEEEKNKG LHIASLKFAE NSISERGRRN AILAAPTTPP
501: NNTPQHV
001: MGDSTGEPGS SMHGVTGREQ SFAFSVQSPI VHTDKTAKFD LPVDTEHKAT VFKLFSFAKP HMRTFHLSWI SFSTCFVSTF AAAPLVPIIR ENLNLTKQDI
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
301: VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV
401: PFVSRRALGI ISGLTGAGGN FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE AHYYGSEWNE QEKQKNMHQG
501: SLRFAENAKS EGGRRVRSAA TPPENTPNNV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
301: VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV
401: PFVSRRALGI ISGLTGAGGN FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE AHYYGSEWNE QEKQKNMHQG
501: SLRFAENAKS EGGRRVRSAA TPPENTPNNV
Arabidopsis Description
NRT2.1High-affinity nitrate transporter 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O82811]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.