Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS6B01G238700.1 | Wheat | extracellular | 99.49 | 99.49 |
TraesCS6A01G209900.1 | Wheat | extracellular | 99.49 | 99.49 |
HORVU6Hr1G053710.1 | Barley | extracellular | 96.97 | 96.97 |
TraesCS6D01G193200.2 | Wheat | plasma membrane | 95.45 | 95.45 |
TraesCS5D01G506100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 89.9 | 89.45 |
Zm00001d017095_P001 | Maize | extracellular | 60.1 | 58.62 |
GSMUA_Achr6P12130_001 | Banana | endoplasmic reticulum, extracellular | 57.58 | 57.0 |
EES07094 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 59.6 | 55.92 |
GSMUA_Achr9P01940_001 | Banana | endoplasmic reticulum | 54.55 | 54.55 |
Os02t0595900-01 | Rice | plasma membrane | 56.57 | 54.37 |
GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 52.53 | 50.98 |
VIT_17s0000g09470.t01 | Wine grape | endoplasmic reticulum, vacuole | 51.52 | 50.75 |
KRH03862 | Soybean | endoplasmic reticulum, extracellular | 50.0 | 47.6 |
KRH57152 | Soybean | endoplasmic reticulum, extracellular | 49.49 | 47.12 |
CDY34047 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 42.42 | 40.78 |
AT5G50200.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 42.93 | 40.48 |
Bra000613.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 41.92 | 40.29 |
CDY64637 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 41.92 | 40.29 |
Solyc03g112100.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 40.91 | 39.9 |
CDX83019 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 41.41 | 39.81 |
Bra033790.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 41.41 | 39.81 |
Bra013828.1-P | Field mustard | cytosol | 29.8 | 38.31 |
CDX91545 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 40.4 | 37.74 |
CDX71613 | Canola | endoplasmic reticulum, extracellular | 39.39 | 36.79 |
Bra022511.1-P | Field mustard | extracellular | 39.39 | 36.79 |
CDY16372 | Canola | extracellular | 39.39 | 36.79 |
Bra037934.1-P | Field mustard | endoplasmic reticulum, extracellular | 38.38 | 36.54 |
CDY03424 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 38.38 | 36.54 |
CDY05799 | Canola | cytosol, endoplasmic reticulum, plastid | 19.7 | 34.51 |
AT4G24715.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 37.88 | 32.47 |
Solyc03g112090.2.1 | Tomato | extracellular | 17.17 | 29.57 |
CDY34305 | Canola | extracellular, plasma membrane, plastid | 38.38 | 29.01 |
PGSC0003DMT400046695 | Potato | endoplasmic reticulum, golgi, plasma membrane | 43.94 | 26.28 |
Protein Annotations
EnsemblPlants:TraesCS6D01G193100.1 | EnsemblPlantsGene:TraesCS6D01G193100 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010167 | GO:GO:0015706 |
InterPro:Transptr_NO3_Nar2 | PANTHER:PTHR34806 | PFAM:PF16974 | PFscan:PS51257 | PIRSF:PIRSF012939 | SEG:seg |
SignalP:SignalP-noTM | TMHMM:TMhelix | MapMan:25.1.3.2 | : | : | : |
Description
No Description!
Coordinates
chr6D:-:267236834..267237729
Molecular Weight (calculated)
21112.3 Da
IEP (calculated)
9.491
GRAVY (calculated)
0.096
Length
198 amino acids
Sequence
(BLAST)
(BLAST)
001: MARQGMVTAL LLVVLAAGCC ASAGAVAYLS KLPVTLDVTA SPSPGQVLHA GEDVITVTWA LNASQPAGKD ADYKNVKVSL CYAPVSQKER EWRKTHDDLK
101: KDKTCQFKVT QQAYPGTGKV EYRVALDIPT ATYYVRAYAL DASGTQVAYG QTAPASAFNV VSITGVTTSI KVAAGVFSAF SVASLAFFFF IEKRKKNN
101: KDKTCQFKVT QQAYPGTGKV EYRVALDIPT ATYYVRAYAL DASGTQVAYG QTAPASAFNV VSITGVTTSI KVAAGVFSAF SVASLAFFFF IEKRKKNN
001: MRHMCDTHLV VLPYQDHILI RIMAIHTLLF VSLLIFSLIE SSSGGKKDRL FTDLQNSIEV TAKPVKDSGV LEAGKDMVTI TWKLKSSSAK VDTDTAFKTI
101: QVKLCYAPIS QVDRPWRKTD NKLFKDRSCP HEIVSKAYDK TPQSLDWTIG LDIPTGTYFV RAYGIDGDGH EVAYGQSTDE GRTTNLFSVH AISGHHVGLD
201: IASTFFSVFS VVSLFVFFVM EKRKAKLEQR E
101: QVKLCYAPIS QVDRPWRKTD NKLFKDRSCP HEIVSKAYDK TPQSLDWTIG LDIPTGTYFV RAYGIDGDGH EVAYGQSTDE GRTTNLFSVH AISGHHVGLD
201: IASTFFSVFS VVSLFVFFVM EKRKAKLEQR E
Arabidopsis Description
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.