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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane

Predictor Summary:
  • nucleus 1
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • peroxisome 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, extracellular, plasma membrane
Any Predictor:nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:extracellular
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:extracellular, golgi, peroxisome, plastid, vacuole
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plasma membrane
YLoc:extracellular
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc06g010250.2.1
Solyc11g069750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G50200.1 Solyc06g010250.2.1 AT5G60780.1 17012411
AT5G50200.1 Solyc11g069750.1.1 AT5G60780.1 17012411
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_17s0000g09470.t01 Wine grape endoplasmic reticulum, vacuole 56.16 56.72
KRH03862 Soybean endoplasmic reticulum, extracellular 57.14 55.77
KRH57152 Soybean endoplasmic reticulum, extracellular 57.14 55.77
GSMUA_Achr6P12130_001 Banana endoplasmic reticulum, extracellular 52.71 53.5
GSMUA_Achr9P01940_001 Banana endoplasmic reticulum 48.77 50.0
GSMUA_Achr10P... Banana endoplasmic reticulum, plasma membrane 47.78 47.55
Bra013828.1-P Field mustard cytosol 35.96 47.4
AT5G50200.1 Thale cress endoplasmic reticulum, extracellular, plasma membrane 48.28 46.67
CDY05799 Canola cytosol, endoplasmic reticulum, plastid 25.62 46.02
PGSC0003DMT400046695 Potato endoplasmic reticulum, golgi, plasma membrane 74.38 45.62
CDY34047 Canola endoplasmic reticulum, extracellular, plasma membrane 45.81 45.15
Bra000613.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 45.81 45.15
CDY64637 Canola endoplasmic reticulum, extracellular, plasma membrane 45.32 44.66
CDX83019 Canola endoplasmic reticulum, extracellular, plasma membrane 44.83 44.17
Bra033790.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 44.34 43.69
CDX71613 Canola endoplasmic reticulum, extracellular 45.32 43.4
Bra037934.1-P Field mustard endoplasmic reticulum, extracellular 44.34 43.27
CDY16372 Canola extracellular 44.83 42.92
Bra022511.1-P Field mustard extracellular 44.83 42.92
CDX91545 Canola endoplasmic reticulum, extracellular, plasma membrane 44.34 42.45
CDY03424 Canola endoplasmic reticulum, extracellular, plasma membrane 43.35 42.31
TraesCS5D01G506100.1 Wheat endoplasmic reticulum, extracellular, vacuole 41.38 42.21
TraesCS6B01G238800.1 Wheat endoplasmic reticulum, extracellular, vacuole 40.89 41.92
HORVU6Hr1G053710.1 Barley extracellular 40.39 41.41
TraesCS6D01G193200.2 Wheat plasma membrane 40.39 41.41
AT4G24715.1 Thale cress endoplasmic reticulum, extracellular, plasma membrane 46.8 41.13
TraesCS6D01G193100.1 Wheat extracellular 39.9 40.91
TraesCS6B01G238700.1 Wheat extracellular 39.9 40.91
Zm00001d017095_P001 Maize extracellular 40.89 40.89
TraesCS6A01G209900.1 Wheat extracellular 39.41 40.4
EES07094 Sorghum endoplasmic reticulum, extracellular, plasma membrane 41.38 39.81
Os02t0595900-01 Rice plasma membrane 40.39 39.81
Zm00001d003287_P001 Maize endoplasmic reticulum, plasma membrane, vacuole 37.93 39.09
Os04t0480200-01 Rice plasma membrane 39.9 38.57
KXG26563 Sorghum extracellular, plasma membrane, vacuole 39.9 37.33
Solyc03g112090.2.1 Tomato extracellular 20.69 36.52
TraesCS6A01G210000.1 Wheat endoplasmic reticulum 41.38 33.47
CDY34305 Canola extracellular, plasma membrane, plastid 42.86 33.21
TraesCS4A01G367300.1 Wheat plastid 41.38 32.94
HORVU5Hr1G115500.4 Barley mitochondrion, plastid 41.87 32.44
Protein Annotations
EnsemblPlants:Solyc03g112100.2.1EnsemblPlantsGene:Solyc03g112100.2GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0010167
GO:GO:0015706GO:GO:0016020GO:GO:0016021InterPro:Transptr_NO3_Nar2PANTHER:PTHR34806PANTHER:PTHR34806:SF1
PFAM:PF16974PIRSF:PIRSF012939SEG:segSignalP:SignalP-TMTMHMM:TMhelixUniParc:UPI00027692F1
UniProt:K4BK64MapMan:25.1.3.2::::
Description
No Description!
Coordinates
chr3:-:62619652..62621100
Molecular Weight (calculated)
22562.2 Da
IEP (calculated)
9.648
GRAVY (calculated)
-0.073
Length
203 amino acids
Sequence
(BLAST)
001: MAISTRAIFV ATIVICSFLA VCEGDILFST LKKSIEVKAD HKAGVLMAGV DALTLKWSLN TTLPAGSDSG YKSVKLELCY APISQKDRAW RKTEDHLKKD
101: KTCQFKIATV PYKSSNNNYN WTIKRDIPTA TYFVRAYVLN GNGEEIGYGQ NTDDKKVDNL FSIQAISGRH ATLDICSVVF SAFSVVSLFA FFYMEKRKAR
201: AGK
Best Arabidopsis Sequence Match ( AT4G24715.1 )
(BLAST)
001: MRHMCDTHLV VLPYQDHILI RIMAIHTLLF VSLLIFSLIE SSSGGKKDRL FTDLQNSIEV TAKPVKDSGV LEAGKDMVTI TWKLKSSSAK VDTDTAFKTI
101: QVKLCYAPIS QVDRPWRKTD NKLFKDRSCP HEIVSKAYDK TPQSLDWTIG LDIPTGTYFV RAYGIDGDGH EVAYGQSTDE GRTTNLFSVH AISGHHVGLD
201: IASTFFSVFS VVSLFVFFVM EKRKAKLEQR E
Arabidopsis Description

SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.