CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
endoplasmic reticulum 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX93592
CDY50324
CDY69111

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50200.1	CDX93592	AT1G08090.1	17012411
AT5G50200.1	CDY50324	AT5G60780.1	17012411
AT5G50200.1	CDY69111	AT5G60780.1	17012411

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71613	Canola	endoplasmic reticulum, extracellular	91.15	48.58
CDY16372	Canola	extracellular	87.61	46.7
CDX91545	Canola	endoplasmic reticulum, extracellular, plasma membrane	84.96	45.28
CDY34047	Canola	endoplasmic reticulum, extracellular, plasma membrane	81.42	44.66
CDY64637	Canola	endoplasmic reticulum, extracellular, plasma membrane	80.53	44.17
CDX83019	Canola	endoplasmic reticulum, extracellular, plasma membrane	76.99	42.23
AT5G50200.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	72.57	39.05
CDY03424	Canola	endoplasmic reticulum, extracellular, plasma membrane	59.29	32.21
GSMUA_Achr9P01940_001	Banana	endoplasmic reticulum	55.75	31.82
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	56.64	31.37
GSMUA_Achr6P12130_001	Banana	endoplasmic reticulum, extracellular	53.1	30.0
VIT_17s0000g09470.t01	Wine grape	endoplasmic reticulum, vacuole	51.33	28.86
KRH03862	Soybean	endoplasmic reticulum, extracellular	53.1	28.85
KRH57152	Soybean	endoplasmic reticulum, extracellular	52.21	28.37
Solyc03g112100.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	46.02	25.62
CDY34305	Canola	extracellular, plasma membrane, plastid	57.52	24.81
Os02t0595900-01	Rice	plasma membrane	41.59	22.82
Zm00001d017095_P001	Maize	extracellular	38.94	21.67
EES07094	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	38.94	20.85
TraesCS5D01G506100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	36.28	20.6
HORVU6Hr1G053710.1	Barley	extracellular	35.4	20.2
TraesCS6A01G209900.1	Wheat	extracellular	34.51	19.7
TraesCS6B01G238700.1	Wheat	extracellular	34.51	19.7
TraesCS6D01G193100.1	Wheat	extracellular	34.51	19.7
TraesCS6D01G193200.2	Wheat	plasma membrane	34.51	19.7
Os04t0480200-01	Rice	plasma membrane	36.28	19.52
TraesCS6B01G238800.1	Wheat	endoplasmic reticulum, extracellular, vacuole	33.63	19.19
Zm00001d003287_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	30.97	17.77
KXG26563	Sorghum	extracellular, plasma membrane, vacuole	32.74	17.05
TraesCS4A01G367300.1	Wheat	plastid	36.28	16.08
TraesCS6A01G210000.1	Wheat	endoplasmic reticulum	33.63	15.14
HORVU5Hr1G115500.4	Barley	mitochondrion, plastid	34.51	14.89
PGSC0003DMT400046695	Potato	endoplasmic reticulum, golgi, plasma membrane	39.82	13.6
Solyc03g112090.2.1	Tomato	extracellular	6.19	6.09

Protein Annotations

EnsemblPlants:CDY05799	EnsemblPlantsGene:GSBRNA2T00120886001	GO:A0A078EZ13	GO:GO:0006810	GO:GO:0008150	GO:GO:0010167
GO:GO:0015706	InterPro:Transptr_NO3_Nar2	PANTHER:PTHR34806	PANTHER:PTHR34806:SF1	PFAM:PF16974	ProteinID:CDY05799
ProteinID:CDY05799.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF0F68	MapMan:25.1.3.2	:

Description

BnaA10g06210D

Coordinates

chrLK031965:+:23568..23909

Molecular Weight (calculated)

12639.9 Da

IEP (calculated)

8.705

GRAVY (calculated)

-0.298

Length

113 amino acids

Sequence
(BLAST)

001: MSSSRTSCPH KISSWSYDPA MKAGQSFDYT LERDIPTGTY FVRAYAVDTK DHEVAFGQST NEDKTTNLFS VQAISGRHKS LDIASVCFSV FSVVALLVFF
101: VNEKRKAKIE QSK

Best Arabidopsis Sequence Match ( AT5G50200.1 )
(BLAST)

001: MAIQKILFAS LLICSLIQSI HGAEKVRLFK ELDKGALDVT TKPSREGPGV VLDAGKDTLN ITWTLSSIGS KREAEFKIIK VKLCYAPPSQ VDRPWRKTHD
101: ELFKDKTCPH KIIAKPYDKT LQSTTWTLER DIPTGTYFVR AYAVDAIGHE VAYGQSTDDA KKTNLFSVQA ISGRHASLDI ASICFSVFSV VALVVFFVNE
201: KRKAKIEQSK

Arabidopsis Description

NRT3.1High-affinity nitrate transporter 3.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGS5]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.