Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G50200.1 | CDX93592 | AT1G08090.1 | 17012411 |
| AT5G50200.1 | CDY50324 | AT5G60780.1 | 17012411 |
| AT5G50200.1 | CDY69111 | AT5G60780.1 | 17012411 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16372 | Canola | extracellular | 96.23 | 96.23 |
| CDX71613 | Canola | endoplasmic reticulum, extracellular | 88.21 | 88.21 |
| CDY05799 | Canola | cytosol, endoplasmic reticulum, plastid | 45.28 | 84.96 |
| CDY64637 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 82.55 | 84.95 |
| CDY34047 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 80.66 | 83.01 |
| CDX83019 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 76.42 | 78.64 |
| AT5G50200.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 75.47 | 76.19 |
| CDY03424 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 59.43 | 60.58 |
| GSMUA_Achr9P01940_001 | Banana | endoplasmic reticulum | 48.58 | 52.02 |
| VIT_17s0000g09470.t01 | Wine grape | endoplasmic reticulum, vacuole | 48.58 | 51.24 |
| GSMUA_Achr6P12130_001 | Banana | endoplasmic reticulum, extracellular | 47.17 | 50.0 |
| KRH57152 | Soybean | endoplasmic reticulum, extracellular | 47.17 | 48.08 |
| CDY34305 | Canola | extracellular, plasma membrane, plastid | 58.96 | 47.71 |
| KRH03862 | Soybean | endoplasmic reticulum, extracellular | 46.7 | 47.6 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 45.28 | 47.06 |
| Solyc03g112100.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 42.45 | 44.34 |
| HORVU6Hr1G053710.1 | Barley | extracellular | 38.21 | 40.91 |
| TraesCS6D01G193200.2 | Wheat | plasma membrane | 38.21 | 40.91 |
| Zm00001d017095_P001 | Maize | extracellular | 39.15 | 40.89 |
| TraesCS6A01G209900.1 | Wheat | extracellular | 37.74 | 40.4 |
| TraesCS6B01G238700.1 | Wheat | extracellular | 37.74 | 40.4 |
| TraesCS6B01G238800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 37.74 | 40.4 |
| TraesCS6D01G193100.1 | Wheat | extracellular | 37.74 | 40.4 |
| EES07094 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 39.62 | 39.81 |
| Os02t0595900-01 | Rice | plasma membrane | 38.68 | 39.81 |
| TraesCS5D01G506100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 37.26 | 39.7 |
| Os04t0480200-01 | Rice | plasma membrane | 37.26 | 37.62 |
| Zm00001d003287_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 33.02 | 35.53 |
| KXG26563 | Sorghum | extracellular, plasma membrane, vacuole | 32.55 | 31.8 |
| TraesCS6A01G210000.1 | Wheat | endoplasmic reticulum | 37.26 | 31.47 |
| TraesCS4A01G367300.1 | Wheat | plastid | 37.74 | 31.37 |
| Solyc03g112090.2.1 | Tomato | extracellular | 16.51 | 30.43 |
| HORVU5Hr1G115500.4 | Barley | mitochondrion, plastid | 36.79 | 29.77 |
| PGSC0003DMT400046695 | Potato | endoplasmic reticulum, golgi, plasma membrane | 41.04 | 26.28 |
Protein Annotations
| EnsemblPlants:CDX91545 | EnsemblPlantsGene:GSBRNA2T00152929001 | GO:A0A078DQH0 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010167 |
| GO:GO:0015706 | InterPro:Transptr_NO3_Nar2 | PANTHER:PTHR34806 | PANTHER:PTHR34806:SF1 | PFAM:PF16974 | PIRSF:PIRSF012939 |
| ProteinID:CDX91545 | ProteinID:CDX91545.1 | SEG:seg | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EE4991 |
| MapMan:25.1.3.2 | : | : | : | : | : |
Description
BnaC02g16150D
Coordinates
chrLK031868:+:244747..246074
Molecular Weight (calculated)
23583.3 Da
IEP (calculated)
9.557
GRAVY (calculated)
-0.144
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIKKLLFAS LLICSMIQSS HGATKERLFT DLEKGSLEIT ATPSRTGEGV VLAAGIDKLS ITWKVSSTAT KEPEFKTIKV KLCYAPVSQV DRPWRKTHNE
101: LFKDKSCPHK ISSFSYDPTV KTAQSFDYTL ERDIPTGTYY VRAYAVDAID HEVAFGQSTN EAKTTNLFSV QAISGRHKSL DIASVCFSVF SVVALVVFFV
201: NEKRKAKIEQ SR
101: LFKDKSCPHK ISSFSYDPTV KTAQSFDYTL ERDIPTGTYY VRAYAVDAID HEVAFGQSTN EAKTTNLFSV QAISGRHKSL DIASVCFSVF SVVALVVFFV
201: NEKRKAKIEQ SR
001: MAIQKILFAS LLICSLIQSI HGAEKVRLFK ELDKGALDVT TKPSREGPGV VLDAGKDTLN ITWTLSSIGS KREAEFKIIK VKLCYAPPSQ VDRPWRKTHD
101: ELFKDKTCPH KIIAKPYDKT LQSTTWTLER DIPTGTYFVR AYAVDAIGHE VAYGQSTDDA KKTNLFSVQA ISGRHASLDI ASICFSVFSV VALVVFFVNE
201: KRKAKIEQSK
101: ELFKDKTCPH KIIAKPYDKT LQSTTWTLER DIPTGTYFVR AYAVDAIGHE VAYGQSTDDA KKTNLFSVQA ISGRHASLDI ASICFSVFSV VALVVFFVNE
201: KRKAKIEQSK
Arabidopsis Description
NRT3.1High-affinity nitrate transporter 3.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGS5]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.