Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0061g00310.t01 | |
| VIT_06s0061g00320.t01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH03862 | Soybean | endoplasmic reticulum, extracellular | 66.17 | 63.94 |
| KRH57152 | Soybean | endoplasmic reticulum, extracellular | 65.17 | 62.98 |
| GSMUA_Achr9P01940_001 | Banana | endoplasmic reticulum | 60.2 | 61.11 |
| GSMUA_Achr6P12130_001 | Banana | endoplasmic reticulum, extracellular | 60.7 | 61.0 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 58.71 | 57.84 |
| Solyc03g112100.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 56.72 | 56.16 |
| Bra013828.1-P | Field mustard | cytosol | 42.79 | 55.84 |
| HORVU6Hr1G053710.1 | Barley | extracellular | 51.24 | 52.02 |
| CDY34047 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 53.23 | 51.94 |
| TraesCS6D01G193100.1 | Wheat | extracellular | 50.75 | 51.52 |
| Bra000613.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 52.74 | 51.46 |
| CDY05799 | Canola | cytosol, endoplasmic reticulum, plastid | 28.86 | 51.33 |
| TraesCS5D01G506100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 50.75 | 51.26 |
| TraesCS6D01G193200.2 | Wheat | plasma membrane | 50.25 | 51.01 |
| TraesCS6A01G209900.1 | Wheat | extracellular | 50.25 | 51.01 |
| TraesCS6B01G238700.1 | Wheat | extracellular | 50.25 | 51.01 |
| CDY64637 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 52.24 | 50.97 |
| TraesCS6B01G238800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 49.75 | 50.51 |
| AT5G50200.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 52.74 | 50.48 |
| CDY03424 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 51.24 | 49.52 |
| CDY16372 | Canola | extracellular | 51.74 | 49.06 |
| Bra022511.1-P | Field mustard | extracellular | 51.74 | 49.06 |
| Bra037934.1-P | Field mustard | endoplasmic reticulum, extracellular | 50.75 | 49.04 |
| CDX83019 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 50.25 | 49.03 |
| CDX91545 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 51.24 | 48.58 |
| CDX71613 | Canola | endoplasmic reticulum, extracellular | 51.24 | 48.58 |
| Bra033790.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 49.25 | 48.06 |
| Zm00001d017095_P001 | Maize | extracellular | 48.26 | 47.78 |
| EES07094 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 49.75 | 47.39 |
| Zm00001d003287_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 45.27 | 46.19 |
| Os02t0595900-01 | Rice | plasma membrane | 47.26 | 46.12 |
| AT4G24715.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 52.24 | 45.45 |
| Os04t0480200-01 | Rice | plasma membrane | 46.77 | 44.76 |
| KXG26563 | Sorghum | extracellular, plasma membrane, vacuole | 47.26 | 43.78 |
| TraesCS6A01G210000.1 | Wheat | endoplasmic reticulum | 49.75 | 39.84 |
| TraesCS4A01G367300.1 | Wheat | plastid | 50.25 | 39.61 |
| HORVU5Hr1G115500.4 | Barley | mitochondrion, plastid | 50.25 | 38.55 |
| CDY34305 | Canola | extracellular, plasma membrane, plastid | 49.75 | 38.17 |
| Solyc03g112090.2.1 | Tomato | extracellular | 20.9 | 36.52 |
| PGSC0003DMT400046695 | Potato | endoplasmic reticulum, golgi, plasma membrane | 55.72 | 33.84 |
Protein Annotations
| EntrezGene:100258771 | wikigene:100258771 | MapMan:25.1.3.2 | EMBL:AM488700 | ProteinID:CAN71077 | ProteinID:CAN71077.1 |
| ProteinID:CBI14929 | ProteinID:CBI14929.3 | UniProt:D7SHH0 | EMBL:FN594950 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0010167 | GO:GO:0015706 | GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100258771 |
| wikigene:LOC100258771 | PFAM:PF16974 | PIRSF:PIRSF012939 | PFscan:PS51257 | PANTHER:PTHR34806 | PANTHER:PTHR34806:SF1 |
| SignalP:SignalP-noTM | TIGR:TC62296 | TMHMM:TMhelix | InterPro:Transptr_NO3_Nar2 | UniParc:UPI00015C8905 | ArrayExpress:VIT_17s0000g09470 |
| EnsemblPlantsGene:VIT_17s0000g09470 | EnsemblPlants:VIT_17s0000g09470.t01 | unigene:Vvi.3558 | RefSeq:XP_002279861 | RefSeq:XP_002279861.1 | SEG:seg |
Description
No Description!
Coordinates
chr17:+:11135878..11137487
Molecular Weight (calculated)
22253.6 Da
IEP (calculated)
8.965
GRAVY (calculated)
-0.094
Length
201 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRAFLLTS LLLSCLLQIC SGAYFSSLQR TLIVTASPKA GEVLKSGEDK ITVTWGLNQS YPAGTDSAYK TVKVKLCYAP ISQVDRAWRK TVDHLTKDKT
101: CQHKIVSQPY KASNNSVEWT IEKDVPTATY FIRAYAYDAE DQEVAYGQTT DAHKTTNLFG IEAITGRHAS LDIAAVCFSA FSVVSLCGFF WVEKRKSRVA
201: K
101: CQHKIVSQPY KASNNSVEWT IEKDVPTATY FIRAYAYDAE DQEVAYGQTT DAHKTTNLFG IEAITGRHAS LDIAAVCFSA FSVVSLCGFF WVEKRKSRVA
201: K
001: MRHMCDTHLV VLPYQDHILI RIMAIHTLLF VSLLIFSLIE SSSGGKKDRL FTDLQNSIEV TAKPVKDSGV LEAGKDMVTI TWKLKSSSAK VDTDTAFKTI
101: QVKLCYAPIS QVDRPWRKTD NKLFKDRSCP HEIVSKAYDK TPQSLDWTIG LDIPTGTYFV RAYGIDGDGH EVAYGQSTDE GRTTNLFSVH AISGHHVGLD
201: IASTFFSVFS VVSLFVFFVM EKRKAKLEQR E
101: QVKLCYAPIS QVDRPWRKTD NKLFKDRSCP HEIVSKAYDK TPQSLDWTIG LDIPTGTYFV RAYGIDGDGH EVAYGQSTDE GRTTNLFSVH AISGHHVGLD
201: IASTFFSVFS VVSLFVFFVM EKRKAKLEQR E
Arabidopsis Description
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.