Factsheet for VIT_06s0061g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g09470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08090.1	VIT_17s0000g09470.t01	AT5G50200.1	17012411
AT5G60780.1	VIT_17s0000g09470.t01	AT5G50200.1	17012411

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53125	Canola	plastid	46.59	63.04
HORVU6Hr1G005570.1	Barley	golgi, plasma membrane	68.67	62.87
CDX99169	Canola	cytosol	16.87	56.0
CDY31023	Canola	endoplasmic reticulum, extracellular	18.88	55.95
CDY72274	Canola	plasma membrane	75.5	53.26
CDY70994	Canola	golgi, plasma membrane	74.3	52.41
CDY68730	Canola	endoplasmic reticulum, plasma membrane	73.09	46.31
VIT_06s0061g00320.t01	Wine grape	peroxisome	97.19	45.66
KRH22855	Soybean	peroxisome	89.56	42.08
KRH26509	Soybean	peroxisome	88.75	41.7
HORVU6Hr1G005720.1	Barley	extracellular	63.05	41.42
KRH30604	Soybean	peroxisome	87.15	40.94
CDY26984	Canola	plasma membrane	73.09	39.91
Bra018655.1-P	Field mustard	golgi, peroxisome, plasma membrane	77.51	38.52
GSMUA_Achr11P...	Banana	cytosol	73.9	38.17
VIT_08s0040g01500.t01	Wine grape	golgi, peroxisome, plasma membrane, plastid	80.72	37.85
Bra020230.1-P	Field mustard	peroxisome	73.49	37.5
GSMUA_Achr8P14230_001	Banana	golgi, peroxisome, plasma membrane	75.5	37.45
CDY69111	Canola	peroxisome	71.49	37.08
CDY50324	Canola	plasma membrane	71.08	36.88
AT5G60770.1	Thale cress	plasma membrane	77.51	36.62
Bra030713.1-P	Field mustard	golgi, peroxisome, plasma membrane	77.51	36.42
AT1G08090.1	Thale cress	cytosol, peroxisome, plasma membrane	77.11	36.23
CDX93591	Canola	golgi, peroxisome, plasma membrane	66.67	35.78
Bra031610.1-P	Field mustard	golgi, peroxisome, plasma membrane	75.9	35.73
CDY32821	Canola	cytosol, peroxisome, plasma membrane	66.27	35.56
Bra031611.1-P	Field mustard	golgi, peroxisome, plasma membrane	71.49	35.18
CDY06299	Canola	golgi, peroxisome, plasma membrane	71.49	35.18
Bra002453.1-P	Field mustard	golgi, peroxisome, plasma membrane, plastid	74.3	35.1
CDY22703	Canola	golgi, peroxisome, plasma membrane	70.68	35.06
PGSC0003DMT400050654	Potato	plasma membrane	73.9	35.05
Solyc11g069750.1.1	Tomato	extracellular	73.9	35.05
CDY22704	Canola	cytosol, peroxisome, plasma membrane	64.66	34.77
Solyc06g010250.2.1	Tomato	plasma membrane	69.48	34.74
TraesCS6A01G031000.1	Wheat	plasma membrane	70.68	34.71
TraesCS6B01G044500.1	Wheat	plastid	67.47	34.64
CDX93592	Canola	golgi, peroxisome, plasma membrane	63.86	34.57
TraesCS6A01G030900.1	Wheat	plasma membrane	70.28	34.52
TraesCS6A01G031100.1	Wheat	plastid	70.28	34.52
TraesCS6B01G044100.1	Wheat	plastid	70.28	34.52
TraesCS6B01G044200.1	Wheat	plasma membrane	70.28	34.52
TraesCS6B01G044300.1	Wheat	plasma membrane	70.28	34.52
TraesCS6D01G035900.1	Wheat	plasma membrane	70.28	34.52
AT5G60780.1	Thale cress	peroxisome	74.7	34.51
HORVU6Hr1G005590.1	Barley	plasma membrane	69.88	34.32
TraesCS6A01G030700.1	Wheat	plastid	69.88	34.32
TraesCS6A01G030800.1	Wheat	plasma membrane	69.88	34.32
TraesCS6D01G035700.1	Wheat	plasma membrane	69.88	34.32
TraesCS6D01G035800.1	Wheat	plasma membrane	69.88	34.32
Bra038302.1-P	Field mustard	peroxisome	73.49	34.01
HORVU6Hr1G005780.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	62.65	33.84
CDY31024	Canola	endoplasmic reticulum, plasma membrane	20.88	33.77
AT3G45060.1	Thale cress	peroxisome	73.49	33.76
Bra037625.1-P	Field mustard	peroxisome	73.09	33.64
PGSC0003DMT400040689	Potato	plasma membrane	70.68	33.59
TraesCS6A01G031200.1	Wheat	plasma membrane	68.27	33.4
TraesCS6B01G044000.1	Wheat	plasma membrane	67.87	33.2
TraesCS6D01G035600.1	Wheat	plasma membrane	67.87	33.2
Bra002451.1-P	Field mustard	golgi, peroxisome, plasma membrane	71.08	33.02
HORVU6Hr1G005600.2	Barley	endoplasmic reticulum	67.47	33.01
Os02t0112100-01	Rice	golgi, plasma membrane, plastid	70.28	32.83
Os02t0112600-01	Rice	golgi, plasma membrane, plastid	70.28	32.83
Bra037626.1-P	Field mustard	peroxisome	71.89	32.78
Bra038301.1-P	Field mustard	golgi, peroxisome, plasma membrane	71.08	32.6
AT1G08100.1	Thale cress	cytosol, peroxisome, plasma membrane	68.27	32.57
Bra018656.1-P	Field mustard	golgi, peroxisome, plasma membrane	63.05	32.24
HORVU6Hr1G005580.1	Barley	plastid	69.88	31.93
EES04351	Sorghum	golgi, peroxisome, plasma membrane	67.47	31.88
EES06135	Sorghum	golgi, peroxisome, plasma membrane	67.47	31.88
Zm00001d054057_P001	Maize	extracellular	67.07	31.87
Zm00001d054060_P001	Maize	plastid	67.07	31.87
KRH25078	Soybean	peroxisome, plasma membrane, plastid, vacuole	57.03	31.84
TraesCS6D01G038100.1	Wheat	golgi, plasma membrane, vacuole	64.66	31.63
TraesCS6B01G045700.1	Wheat	plastid	64.26	31.62
TraesCS6A01G032400.1	Wheat	plastid	64.26	31.5
TraesCS6A01G032500.1	Wheat	plastid	64.26	31.5
TraesCS6B01G045600.1	Wheat	golgi, plasma membrane, vacuole	64.26	31.5
TraesCS6D01G037200.1	Wheat	golgi, plasma membrane, plastid	64.26	31.5
TraesCS6D01G037300.1	Wheat	golgi, plasma membrane, plastid	64.26	31.5
VIT_01s0127g00070.t01	Wine grape	plasma membrane	63.86	31.49
TraesCS6A01G033000.1	Wheat	plasma membrane	64.26	31.43
TraesCS6B01G046600.1	Wheat	plasma membrane	64.26	31.43
TraesCS6D01G037900.1	Wheat	plasma membrane	64.26	31.43
TraesCS6D01G037800.1	Wheat	plasma membrane	63.45	31.16
TraesCS6A01G032900.1	Wheat	golgi, plasma membrane, vacuole	63.45	31.04
TraesCS6B01G044400.1	Wheat	plastid	70.28	30.97
TraesCS6A01G032800.1	Wheat	plasma membrane	63.05	30.97
TraesCS6B01G046500.1	Wheat	plasma membrane	63.05	30.97
HORVU6Hr1G005770.1	Barley	plasma membrane	63.05	30.84
Zm00001d014976_P001	Maize	plasma membrane	64.26	30.65
TraesCS6D01G038000.1	Wheat	plasma membrane	62.25	30.57
HORVU6Hr1G005930.1	Barley	plasma membrane	62.25	30.51
TraesCS6B01G046700.1	Wheat	plasma membrane	62.25	30.51
TraesCS6A01G033200.1	Wheat	plasma membrane	61.85	30.32
TraesCS6D01G038200.1	Wheat	plasma membrane	61.85	30.32
TraesCS6A01G033100.1	Wheat	plasma membrane	61.45	30.12
EES04350	Sorghum	plastid	64.66	30.09
TraesCS6D01G038300.1	Wheat	plasma membrane	61.04	29.92
TraesCS2A01G074800.1	Wheat	plasma membrane	58.63	29.08
TraesCS2D01G073500.1	Wheat	plasma membrane	57.43	28.66
CDY06298	Canola	golgi, peroxisome, plasma membrane	43.37	25.65
VIT_14s0066g00850.t01	Wine grape	plasma membrane	46.59	25.49
AT4G14358.1	Thale cress	cytosol	1.61	4.6
HORVU6Hr1G005750.1	Barley	cytosol, plastid	1.61	3.96
Bra034142.1-P	Field mustard	plasma membrane	0.0	0.0

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:100253304	MapMan:24.2.2.10	MapMan:25.1.3.1	ProteinID:CCB44241	ProteinID:CCB44241.1
UniProt:F6GWA6	EMBL:FN594957	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150
GO:GO:0009705	GO:GO:0009987	GO:GO:0015112	GO:GO:0015706	GO:GO:0016020	GO:GO:0016021
GO:GO:0071249	InterPro:IPR020846	InterPro:MFS_dom	InterPro:MFS_trans_sf	PANTHER:PTHR23515	PANTHER:PTHR23515:SF3
SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI000210A61D	ArrayExpress:VIT_06s0061g00310	EnsemblPlantsGene:VIT_06s0061g00310	EnsemblPlants:VIT_06s0061g00310.t01
RefSeq:XP_010651839.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:17701953..17702888

Molecular Weight (calculated)

26894.7 Da

IEP (calculated)

8.728

GRAVY (calculated)

0.202

Length

249 amino acids

Sequence
(BLAST)

001: MDLCPALCYS MGVELSIDNV IAEYFYDRFN LKLHTAGIIA ATFGMANLVA RPFGGYSSDL AGRRFGMRGR LWTLWILQTL GGVFCIWLGR ANSLPIAVLA
101: MMLFSVGAQA ACGATFGIVP FISRRSLGII SGLTGAGGNF GSGLTQLVFF SSSKFSTATG LSLMGAMIVA CTLPVTLVHF PQWGSMFLPP SKDVIKGTEE
201: HYYESEWNEE EKQKGMHQGS LKFAENSRSE RGKRVASAPT PPNSTPSHV

Best Arabidopsis Sequence Match ( AT1G08090.1 )
(BLAST)

001: MGDSTGEPGS SMHGVTGREQ SFAFSVQSPI VHTDKTAKFD LPVDTEHKAT VFKLFSFAKP HMRTFHLSWI SFSTCFVSTF AAAPLVPIIR ENLNLTKQDI
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
301: VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV
401: PFVSRRALGI ISGLTGAGGN FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE AHYYGSEWNE QEKQKNMHQG
501: SLRFAENAKS EGGRRVRSAA TPPENTPNNV

Arabidopsis Description

NRT2.1High-affinity nitrate transporter 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O82811]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.