Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G031100.1 | Wheat | plastid | 99.41 | 99.41 |
| HORVU6Hr1G005590.1 | Barley | plasma membrane | 98.22 | 98.22 |
| TraesCS6B01G044300.1 | Wheat | plasma membrane | 98.22 | 98.22 |
| TraesCS6B01G044200.1 | Wheat | plasma membrane | 97.63 | 97.63 |
| TraesCS6B01G044000.1 | Wheat | plasma membrane | 92.31 | 91.94 |
| TraesCS6B01G044500.1 | Wheat | plastid | 87.77 | 91.75 |
| TraesCS6B01G044400.1 | Wheat | plastid | 98.42 | 88.32 |
| TraesCS6B01G046500.1 | Wheat | plasma membrane | 82.25 | 82.25 |
| TraesCS6B01G046600.1 | Wheat | plasma membrane | 81.66 | 81.34 |
| TraesCS6B01G046700.1 | Wheat | plasma membrane | 81.46 | 81.3 |
| Zm00001d054060_P001 | Maize | plastid | 83.63 | 80.92 |
| EES06135 | Sorghum | golgi, peroxisome, plasma membrane | 84.02 | 80.83 |
| EES04351 | Sorghum | golgi, peroxisome, plasma membrane | 84.02 | 80.83 |
| Zm00001d054057_P001 | Maize | extracellular | 83.43 | 80.73 |
| TraesCS6B01G045700.1 | Wheat | plastid | 80.28 | 80.43 |
| TraesCS6B01G045600.1 | Wheat | golgi, plasma membrane, vacuole | 80.47 | 80.31 |
| Os02t0112600-01 | Rice | golgi, plasma membrane, plastid | 83.83 | 79.74 |
| Os02t0112100-01 | Rice | golgi, plasma membrane, plastid | 83.83 | 79.74 |
| Zm00001d014976_P001 | Maize | plasma membrane | 77.51 | 75.29 |
| EES04350 | Sorghum | plastid | 77.71 | 73.64 |
| KRH22855 | Soybean | peroxisome | 76.92 | 73.58 |
| KRH26509 | Soybean | peroxisome | 76.73 | 73.4 |
| KRH30604 | Soybean | peroxisome | 76.13 | 72.83 |
| GSMUA_Achr8P14230_001 | Banana | golgi, peroxisome, plasma membrane | 71.79 | 72.51 |
| PGSC0003DMT400050658 | Potato | plasma membrane | 61.93 | 72.35 |
| GSMUA_Achr11P... | Banana | cytosol | 67.85 | 71.37 |
| VIT_06s0061g00320.t01 | Wine grape | peroxisome | 74.16 | 70.94 |
| VIT_08s0040g01500.t01 | Wine grape | golgi, peroxisome, plasma membrane, plastid | 74.16 | 70.81 |
| CDY06298 | Canola | golgi, peroxisome, plasma membrane | 58.58 | 70.55 |
| VIT_06s0061g00310.t01 | Wine grape | plasma membrane | 34.52 | 70.28 |
| CDY32821 | Canola | cytosol, peroxisome, plasma membrane | 63.31 | 69.18 |
| CDX93591 | Canola | golgi, peroxisome, plasma membrane | 63.31 | 69.18 |
| PGSC0003DMT400092589 | Potato | plasma membrane | 72.78 | 69.1 |
| Bra030713.1-P | Field mustard | golgi, peroxisome, plasma membrane | 71.99 | 68.87 |
| PGSC0003DMT400031306 | Potato | plasma membrane | 47.93 | 68.84 |
| CDX93592 | Canola | golgi, peroxisome, plasma membrane | 62.33 | 68.7 |
| CDY22704 | Canola | cytosol, peroxisome, plasma membrane | 62.72 | 68.68 |
| AT1G08090.1 | Thale cress | cytosol, peroxisome, plasma membrane | 71.79 | 68.68 |
| PGSC0003DMT400002924 | Potato | plasma membrane | 71.79 | 68.68 |
| Bra018656.1-P | Field mustard | golgi, peroxisome, plasma membrane | 65.88 | 68.58 |
| CDY72274 | Canola | plasma membrane | 47.73 | 68.56 |
| CDY70994 | Canola | golgi, plasma membrane | 47.73 | 68.56 |
| Bra031610.1-P | Field mustard | golgi, peroxisome, plasma membrane | 71.4 | 68.43 |
| Bra034142.1-P | Field mustard | plasma membrane | 20.71 | 68.18 |
| Bra018655.1-P | Field mustard | golgi, peroxisome, plasma membrane | 67.26 | 68.06 |
| AT5G60770.1 | Thale cress | plasma membrane | 70.61 | 67.93 |
| Solyc06g010250.2.1 | Tomato | plasma membrane | 66.67 | 67.87 |
| PGSC0003DMT400050654 | Potato | plasma membrane | 70.22 | 67.81 |
| Solyc11g069760.1.1 | Tomato | extracellular, plasma membrane | 24.46 | 67.76 |
| PGSC0003DMT400031304 | Potato | plasma membrane | 70.81 | 67.74 |
| CDY22703 | Canola | golgi, peroxisome, plasma membrane | 67.06 | 67.73 |
| KRH25078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 59.57 | 67.71 |
| CDY68730 | Canola | endoplasmic reticulum, plasma membrane | 52.47 | 67.68 |
| Bra031611.1-P | Field mustard | golgi, peroxisome, plasma membrane | 67.46 | 67.59 |
| CDY06299 | Canola | golgi, peroxisome, plasma membrane | 67.46 | 67.59 |
| Solyc11g069750.1.1 | Tomato | extracellular | 69.82 | 67.43 |
| Bra002453.1-P | Field mustard | golgi, peroxisome, plasma membrane, plastid | 70.02 | 67.36 |
| AT1G08100.1 | Thale cress | cytosol, peroxisome, plasma membrane | 67.65 | 65.71 |
| AT5G60780.1 | Thale cress | peroxisome | 68.24 | 64.19 |
| PGSC0003DMT400040689 | Potato | plasma membrane | 66.08 | 63.93 |
| Bra038302.1-P | Field mustard | peroxisome | 67.46 | 63.57 |
| Bra002451.1-P | Field mustard | golgi, peroxisome, plasma membrane | 67.06 | 63.43 |
| AT3G45060.1 | Thale cress | peroxisome | 67.65 | 63.28 |
| Solyc06g074990.1.1 | Tomato | plasma membrane | 65.48 | 63.12 |
| Bra037625.1-P | Field mustard | peroxisome | 67.26 | 63.03 |
| CDY69111 | Canola | peroxisome | 59.57 | 62.92 |
| CDY50324 | Canola | plasma membrane | 59.57 | 62.92 |
| Bra020230.1-P | Field mustard | peroxisome | 59.76 | 62.09 |
| Bra037626.1-P | Field mustard | peroxisome | 66.86 | 62.09 |
| CDY31024 | Canola | endoplasmic reticulum, plasma membrane | 18.74 | 61.69 |
| Bra038301.1-P | Field mustard | golgi, peroxisome, plasma membrane | 64.89 | 60.59 |
| CDY26984 | Canola | plasma membrane | 54.24 | 60.31 |
| CDY53125 | Canola | plastid | 20.32 | 55.98 |
| TraesCS3B01G285900.1 | Wheat | plasma membrane | 56.02 | 55.25 |
| CDY31023 | Canola | endoplasmic reticulum, extracellular | 8.68 | 52.38 |
| CDX99169 | Canola | cytosol | 7.3 | 49.33 |
| AT4G14358.1 | Thale cress | cytosol | 7.1 | 41.38 |
| Solyc11g069740.1.1 | Tomato | cytosol, peroxisome | 40.24 | 39.46 |
| TraesCS7B01G328700.1 | Wheat | golgi, peroxisome, plasma membrane | 36.69 | 38.27 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G044100.1 | EnsemblPlantsGene:TraesCS6B01G044100 | Gene3D:1.20.1250.20 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR020846 | InterPro:MFS | InterPro:MFS_dom |
| InterPro:MFS_trans_sf | PANTHER:PTHR23515 | PANTHER:PTHR23515:SF3 | PFAM:PF07690 | SEG:seg | SUPFAM:SSF103473 |
| TIGR:cd06174 | TMHMM:TMhelix | MapMan:24.2.2.10 | MapMan:25.1.3.1 | : | : |
Description
No Description!
Coordinates
chr6B:-:26596252..26597775
Molecular Weight (calculated)
54762.7 Da
IEP (calculated)
8.288
GRAVY (calculated)
0.393
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVQAGSHAD AAASKFTLPV DSEHKAKSFR LFSFANPHMR TFHLSWISFF TCFVSTFAAA PLVPIIRDNL NLAKADIGNA GVASVSGSIF SRLAMGAICD
101: LLGPRYGCAF LVMLSAPTVF CMAVIDDASG YIAVRFLIGF SLATFVSCQY WMSTMFNSKI IGTVNGLAAG WGNMGGGATQ LIMPLVFHAI QKCGATPFVA
201: WRIAYFVPGM MHIVMGLLVL TMGQDLPDGN LASLQKKGDM AKDKFSKVLW GAVTNYRTWI FVLLYGYCMG VELTTDNVIA EYYYDHFHLD LRAAGTIAAC
301: FGMANIVARP MGGYLSDLGA RYFGMRARLW NIWILQTAGG AFCIWLGRAS ALPASVTAMV LFSICAQAAC GAVFGVAPFV SRRSLGIISG LTGAGGNVGA
401: GLTQLLFFTS SQYSTGRGLE YMGIMIMACT LPVALVHFPQ WGSMFFPASA DATEEEYYAS EWSEEEKNKG LHIAGQKFAE NSRSERGRRN VILATSVTPP
501: NNTPQHV
101: LLGPRYGCAF LVMLSAPTVF CMAVIDDASG YIAVRFLIGF SLATFVSCQY WMSTMFNSKI IGTVNGLAAG WGNMGGGATQ LIMPLVFHAI QKCGATPFVA
201: WRIAYFVPGM MHIVMGLLVL TMGQDLPDGN LASLQKKGDM AKDKFSKVLW GAVTNYRTWI FVLLYGYCMG VELTTDNVIA EYYYDHFHLD LRAAGTIAAC
301: FGMANIVARP MGGYLSDLGA RYFGMRARLW NIWILQTAGG AFCIWLGRAS ALPASVTAMV LFSICAQAAC GAVFGVAPFV SRRSLGIISG LTGAGGNVGA
401: GLTQLLFFTS SQYSTGRGLE YMGIMIMACT LPVALVHFPQ WGSMFFPASA DATEEEYYAS EWSEEEKNKG LHIAGQKFAE NSRSERGRRN VILATSVTPP
501: NNTPQHV
001: MGSTDEPGSS MHGVTGREQS YAFSVDGSEP TNTKKKYNLP VDAEDKATVF KLFSFAKPHM RTFHLSWISF STCFVSTFAA APLIPIIREN LNLTKHDIGN
101: AGVASVSGSI FSRLVMGAVC DLLGPRYGCA FLVMLSAPTV FSMSFVSDAA GFITVRFMIG FCLATFVSCQ YWMSTMFNSQ IIGLVNGTAA GWGNMGGGIT
201: QLLMPIVYEI IRRCGSTAFT AWRIAFFVPG WLHIIMGILV LTLGQDLPGG NRAAMEKAGE VAKDKFGKIL WYAVTNYRTW IFVLLYGYSM GVELSTDNVI
301: AEYFFDRFHL KLHTAGIIAA CFGMANFFAR PAGGWASDIA AKRFGMRGRL WTLWIIQTSG GLFCVWLGRA NTLVTAVVSM VLFSLGAQAA CGATFAIVPF
401: VSRRALGIIS GLTGAGGNFG SGLTQLVFFS TSRFTTEEGL TWMGVMIVAC TLPVTLIHFP QWGSMFFPPS NDSVDATEHY YVGEYSKEEQ QIGMHLKSKL
501: FADGAKTEGG SSVHKGNATN NA
101: AGVASVSGSI FSRLVMGAVC DLLGPRYGCA FLVMLSAPTV FSMSFVSDAA GFITVRFMIG FCLATFVSCQ YWMSTMFNSQ IIGLVNGTAA GWGNMGGGIT
201: QLLMPIVYEI IRRCGSTAFT AWRIAFFVPG WLHIIMGILV LTLGQDLPGG NRAAMEKAGE VAKDKFGKIL WYAVTNYRTW IFVLLYGYSM GVELSTDNVI
301: AEYFFDRFHL KLHTAGIIAA CFGMANFFAR PAGGWASDIA AKRFGMRGRL WTLWIIQTSG GLFCVWLGRA NTLVTAVVSM VLFSLGAQAA CGATFAIVPF
401: VSRRALGIIS GLTGAGGNFG SGLTQLVFFS TSRFTTEEGL TWMGVMIVAC TLPVTLIHFP QWGSMFFPPS NDSVDATEHY YVGEYSKEEQ QIGMHLKSKL
501: FADGAKTEGG SSVHKGNATN NA
Arabidopsis Description
NRT2.2NRT2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F7]
SUBAcon: [peroxisome,cytosol,plasma membrane]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.