Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- golgi 1
- plasma membrane 3
- mitochondrion 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400046695 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G60780.1 | PGSC0003DMT400046695 | AT5G50200.1 | 17012411 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g010250.2.1 | Tomato | plasma membrane | 92.56 | 97.39 |
| PGSC0003DMT400050654 | Potato | plasma membrane | 79.58 | 79.43 |
| Bra034142.1-P | Field mustard | plasma membrane | 21.95 | 74.68 |
| VIT_06s0061g00320.t01 | Wine grape | peroxisome | 72.33 | 71.51 |
| VIT_06s0061g00310.t01 | Wine grape | plasma membrane | 33.59 | 70.68 |
| KRH30604 | Soybean | peroxisome | 70.8 | 70.0 |
| KRH26509 | Soybean | peroxisome | 70.8 | 70.0 |
| KRH22855 | Soybean | peroxisome | 70.61 | 69.81 |
| Bra020230.1-P | Field mustard | peroxisome | 64.89 | 69.67 |
| PGSC0003DMT400050658 | Potato | plasma membrane | 57.63 | 69.59 |
| Bra002451.1-P | Field mustard | golgi, peroxisome, plasma membrane | 70.99 | 69.4 |
| CDY50324 | Canola | plasma membrane | 63.36 | 69.17 |
| AT5G60780.1 | Thale cress | peroxisome | 70.99 | 69.02 |
| CDY69111 | Canola | peroxisome | 63.17 | 68.96 |
| AT3G45060.1 | Thale cress | peroxisome | 71.18 | 68.82 |
| Bra037625.1-P | Field mustard | peroxisome | 70.8 | 68.58 |
| HORVU6Hr1G005750.1 | Barley | cytosol, plastid | 13.17 | 68.32 |
| Bra038302.1-P | Field mustard | peroxisome | 69.85 | 68.03 |
| PGSC0003DMT400092589 | Potato | plasma membrane | 69.27 | 67.98 |
| PGSC0003DMT400002924 | Potato | plasma membrane | 67.94 | 67.17 |
| TraesCS6A01G030900.1 | Wheat | plasma membrane | 64.69 | 66.86 |
| HORVU6Hr1G005590.1 | Barley | plasma membrane | 64.5 | 66.67 |
| TraesCS6D01G035700.1 | Wheat | plasma membrane | 64.31 | 66.47 |
| TraesCS6A01G030700.1 | Wheat | plastid | 64.31 | 66.47 |
| TraesCS6A01G030800.1 | Wheat | plasma membrane | 64.31 | 66.47 |
| TraesCS6D01G035900.1 | Wheat | plasma membrane | 64.31 | 66.47 |
| TraesCS6A01G031000.1 | Wheat | plasma membrane | 64.31 | 66.47 |
| TraesCS6B01G044300.1 | Wheat | plasma membrane | 64.31 | 66.47 |
| Bra037626.1-P | Field mustard | peroxisome | 69.08 | 66.3 |
| TraesCS6B01G044200.1 | Wheat | plasma membrane | 64.12 | 66.27 |
| TraesCS6D01G035800.1 | Wheat | plasma membrane | 64.12 | 66.27 |
| TraesCS6A01G031100.1 | Wheat | plastid | 63.93 | 66.08 |
| TraesCS6B01G044100.1 | Wheat | plastid | 63.93 | 66.08 |
| PGSC0003DMT400031306 | Potato | plasma membrane | 44.47 | 66.01 |
| GSMUA_Achr8P14230_001 | Banana | golgi, peroxisome, plasma membrane | 62.98 | 65.74 |
| PGSC0003DMT400031304 | Potato | plasma membrane | 66.41 | 65.66 |
| TraesCS6B01G044000.1 | Wheat | plasma membrane | 63.55 | 65.42 |
| Bra038301.1-P | Field mustard | golgi, peroxisome, plasma membrane | 67.75 | 65.38 |
| EES06135 | Sorghum | golgi, peroxisome, plasma membrane | 65.65 | 65.28 |
| KRH25078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 55.53 | 65.25 |
| TraesCS6A01G031200.1 | Wheat | plasma membrane | 63.36 | 65.23 |
| EES04351 | Sorghum | golgi, peroxisome, plasma membrane | 65.46 | 65.09 |
| Zm00001d054060_P001 | Maize | plastid | 64.89 | 64.89 |
| TraesCS6D01G035600.1 | Wheat | plasma membrane | 62.98 | 64.83 |
| Zm00001d054057_P001 | Maize | extracellular | 64.69 | 64.69 |
| HORVU6Hr1G005780.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 56.68 | 64.43 |
| TraesCS6B01G045600.1 | Wheat | golgi, plasma membrane, vacuole | 62.4 | 64.37 |
| TraesCS6D01G037200.1 | Wheat | golgi, plasma membrane, plastid | 62.4 | 64.37 |
| TraesCS6A01G032500.1 | Wheat | plastid | 62.21 | 64.17 |
| Os02t0112100-01 | Rice | golgi, plasma membrane, plastid | 65.27 | 64.17 |
| Os02t0112600-01 | Rice | golgi, plasma membrane, plastid | 65.27 | 64.17 |
| HORVU6Hr1G005720.1 | Barley | extracellular | 46.37 | 64.12 |
| TraesCS6A01G032400.1 | Wheat | plastid | 62.02 | 63.98 |
| TraesCS6D01G037300.1 | Wheat | golgi, plasma membrane, plastid | 62.02 | 63.98 |
| HORVU6Hr1G005570.1 | Barley | golgi, plasma membrane | 33.21 | 63.97 |
| TraesCS6D01G037800.1 | Wheat | plasma membrane | 61.83 | 63.91 |
| GSMUA_Achr11P... | Banana | cytosol | 58.78 | 63.9 |
| TraesCS6B01G045700.1 | Wheat | plastid | 61.64 | 63.83 |
| TraesCS6B01G046500.1 | Wheat | plasma membrane | 61.64 | 63.71 |
| CDY31024 | Canola | endoplasmic reticulum, plasma membrane | 18.7 | 63.64 |
| TraesCS6B01G046700.1 | Wheat | plasma membrane | 61.45 | 63.39 |
| TraesCS6A01G032800.1 | Wheat | plasma membrane | 61.26 | 63.31 |
| TraesCS6D01G037900.1 | Wheat | plasma membrane | 61.26 | 63.06 |
| TraesCS6D01G038200.1 | Wheat | plasma membrane | 61.07 | 62.99 |
| TraesCS6D01G038300.1 | Wheat | plasma membrane | 61.07 | 62.99 |
| TraesCS6A01G033100.1 | Wheat | plasma membrane | 61.07 | 62.99 |
| TraesCS6B01G046600.1 | Wheat | plasma membrane | 61.07 | 62.87 |
| TraesCS6A01G033000.1 | Wheat | plasma membrane | 61.07 | 62.87 |
| HORVU6Hr1G005770.1 | Barley | plasma membrane | 61.07 | 62.87 |
| Zm00001d014976_P001 | Maize | plasma membrane | 62.6 | 62.84 |
| TraesCS6A01G033200.1 | Wheat | plasma membrane | 60.69 | 62.6 |
| HORVU6Hr1G005600.2 | Barley | endoplasmic reticulum | 60.69 | 62.48 |
| TraesCS6A01G032900.1 | Wheat | golgi, plasma membrane, vacuole | 60.69 | 62.48 |
| HORVU6Hr1G005930.1 | Barley | plasma membrane | 60.5 | 62.4 |
| HORVU6Hr1G005580.1 | Barley | plastid | 64.69 | 62.2 |
| TraesCS6D01G038100.1 | Wheat | golgi, plasma membrane, vacuole | 60.31 | 62.08 |
| TraesCS6D01G038000.1 | Wheat | plasma membrane | 59.92 | 61.93 |
| EES04350 | Sorghum | plastid | 62.4 | 61.12 |
| TraesCS2A01G074800.1 | Wheat | plasma membrane | 58.21 | 60.76 |
| TraesCS2D01G073500.1 | Wheat | plasma membrane | 57.82 | 60.72 |
| TraesCS6B01G044500.1 | Wheat | plastid | 55.92 | 60.41 |
| TraesCS6B01G044400.1 | Wheat | plastid | 65.08 | 60.35 |
| CDY53125 | Canola | plastid | 20.04 | 57.07 |
| PGSC0003DMT400043794 | Potato | plasma membrane | 52.29 | 54.8 |
| PGSC0003DMT400017804 | Potato | plasma membrane | 38.93 | 48.11 |
| CDY31023 | Canola | endoplasmic reticulum, extracellular | 7.63 | 47.62 |
| CDX99169 | Canola | cytosol | 5.92 | 41.33 |
| AT4G14358.1 | Thale cress | cytosol | 6.49 | 39.08 |
Protein Annotations
| Gene3D:1.20.1250.20 | EntrezGene:102584553 | MapMan:24.2.2.10 | MapMan:25.1.3.1 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR020846 | UniProt:M1BA89 |
| InterPro:MFS | InterPro:MFS_dom | InterPro:MFS_trans_sf | PFAM:PF07690 | EnsemblPlantsGene:PGSC0003DMG400015734 | PGSC:PGSC0003DMG400015734 |
| EnsemblPlants:PGSC0003DMT400040689 | PANTHER:PTHR23515 | PANTHER:PTHR23515:SF3 | SUPFAM:SSF103473 | TMHMM:TMhelix | UniParc:UPI000294C403 |
| RefSeq:XP_006359576.1 | SEG:seg | : | : | : | : |
Description
High-affinity nitrate transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400015734]
Coordinates
chr6:-:11860378..11862454
Molecular Weight (calculated)
56922.5 Da
IEP (calculated)
9.022
GRAVY (calculated)
0.432
Length
524 amino acids
Sequence
(BLAST)
(BLAST)
001: MANAEGCVGT SAHGLTGKEE TFTFSMSSSS SGVTKFSLPV DSEHKAKTLK ILSFAQPHMR SFHLAWISFF PCLISPFAAA PLVPIIRDNL DLTRSDIGNA
101: GVASVSGSIF SRLVMGVVCD LIGPRYGCAF VNLLTAPVVF SVAFVSTPQG YIAVRFMIGV SLATFVSCQY WTSTMFNGQI IGLVNGVAAG WGDMGGGVTQ
201: LLMPFLFHII QLTGATPFTA WRIAFFIPGW LHIIVGVMVL VLGQDLPDGN LSDLQKSGHV HKDKFSKVFR FAVTNYRTWV FFLVYGYSMG VQLCMNNVIA
301: EYFFDKFNLK LHTAGVIAGA YGMVNFVARP FGGYASDLAA RKFGMRGRLW ILWIVQTLGG VFCVWLGRAE TLPIAILAMI LFSVGAQAAC GATYGVIPFV
401: SRRSLGLISG LTGAGGNFGG GLTQLIFFSS TTFSTSMGLT WMGFMAVACT VPIALIHFPQ WGSMFLPASK DEKYNEEKYY SSEWSDDEKQ KGLHNASIKF
501: AENSISERGR KHIIIYSATT PPHV
101: GVASVSGSIF SRLVMGVVCD LIGPRYGCAF VNLLTAPVVF SVAFVSTPQG YIAVRFMIGV SLATFVSCQY WTSTMFNGQI IGLVNGVAAG WGDMGGGVTQ
201: LLMPFLFHII QLTGATPFTA WRIAFFIPGW LHIIVGVMVL VLGQDLPDGN LSDLQKSGHV HKDKFSKVFR FAVTNYRTWV FFLVYGYSMG VQLCMNNVIA
301: EYFFDKFNLK LHTAGVIAGA YGMVNFVARP FGGYASDLAA RKFGMRGRLW ILWIVQTLGG VFCVWLGRAE TLPIAILAMI LFSVGAQAAC GATYGVIPFV
401: SRRSLGLISG LTGAGGNFGG GLTQLIFFSS TTFSTSMGLT WMGFMAVACT VPIALIHFPQ WGSMFLPASK DEKYNEEKYY SSEWSDDEKQ KGLHNASIKF
501: AENSISERGR KHIIIYSATT PPHV
001: MADGFGEPGS SMHGVTGREQ SYAFSVESPA VPSDSSAKFS LPVDTEHKAK VFKLLSFEAP HMRTFHLAWI SFFTCFISTF AAAPLVPIIR DNLNLTRQDV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVGG AGGYITVRFM IGFCLATFVS CQYWMSTMFN GQIIGLVNGT AAGWGNMGGG
201: VTQLLMPMVY EIIRRLGSTS FTAWRMAFFV PGWMHIIMGI LVLTLGQDLP DGNRSTLEKK GAVTKDKFSK VLWYAITNYR TWVFVLLYGY SMGVELTTDN
301: VIAEYFFDRF HLKLHTAGII AASFGMANFF ARPIGGWASD IAARRFGMRG RLWTLWIIQT LGGFFCLWLG RATTLPTAVV FMILFSLGAQ AACGATFAII
401: PFISRRSLGI ISGLTGAGGN FGSGLTQLVF FSTSTFSTEQ GLTWMGVMIM ACTLPVTLVH FPQWGSMFLP STEDEVKSTE EYYYMKEWTE TEKRKGMHEG
501: SLKFAVNSRS ERGRRVASAP SPPPEHV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVGG AGGYITVRFM IGFCLATFVS CQYWMSTMFN GQIIGLVNGT AAGWGNMGGG
201: VTQLLMPMVY EIIRRLGSTS FTAWRMAFFV PGWMHIIMGI LVLTLGQDLP DGNRSTLEKK GAVTKDKFSK VLWYAITNYR TWVFVLLYGY SMGVELTTDN
301: VIAEYFFDRF HLKLHTAGII AASFGMANFF ARPIGGWASD IAARRFGMRG RLWTLWIIQT LGGFFCLWLG RATTLPTAVV FMILFSLGAQ AACGATFAII
401: PFISRRSLGI ISGLTGAGGN FGSGLTQLVF FSTSTFSTEQ GLTWMGVMIM ACTLPVTLVH FPQWGSMFLP STEDEVKSTE EYYYMKEWTE TEKRKGMHEG
501: SLKFAVNSRS ERGRRVASAP SPPPEHV
Arabidopsis Description
NRT2.4High affinity nitrate transporter 2.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.