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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • cytosol 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, plastid, secretory
BaCelLo:plastid
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU5Hr1G115500.4
HORVU6Hr1G053710.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G08090.1 HORVU5Hr1G115500.4 AT5G50200.1 17012411
AT1G08090.1 HORVU6Hr1G053710.1 AT5G50200.1 17012411
AT5G60780.1 HORVU5Hr1G115500.4 AT5G50200.1 17012411
AT5G60780.1 HORVU6Hr1G053710.1 AT5G50200.1 17012411
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G038200.1 Wheat plasma membrane 98.03 98.03
TraesCS6A01G033100.1 Wheat plasma membrane 97.83 97.83
TraesCS6D01G038300.1 Wheat plasma membrane 97.44 97.44
TraesCS6B01G046700.1 Wheat plasma membrane 97.05 97.05
TraesCS6A01G033200.1 Wheat plasma membrane 96.65 96.65
HORVU6Hr1G005780.1 Barley endoplasmic reticulum, plasma membrane, vacuole 85.43 94.14
HORVU6Hr1G005750.1 Barley cytosol, plastid 18.11 91.09
HORVU6Hr1G005770.1 Barley plasma membrane 91.14 90.96
HORVU6Hr1G005720.1 Barley extracellular 66.73 89.45
HORVU6Hr1G005570.1 Barley golgi, plasma membrane 43.9 81.99
HORVU6Hr1G005590.1 Barley plasma membrane 80.71 80.87
HORVU6Hr1G005600.2 Barley endoplasmic reticulum 79.13 78.98
HORVU6Hr1G005580.1 Barley plastid 81.1 75.6
Os02t0112600-01 Rice golgi, plasma membrane, plastid 77.17 73.55
Os02t0112100-01 Rice golgi, plasma membrane, plastid 77.17 73.55
Zm00001d054057_P001 Maize extracellular 75.59 73.28
Zm00001d054060_P001 Maize plastid 75.39 73.09
EES06135 Sorghum golgi, peroxisome, plasma membrane 75.2 72.49
EES04351 Sorghum golgi, peroxisome, plasma membrane 75.2 72.49
Zm00001d014976_P001 Maize plasma membrane 73.82 71.84
EES04350 Sorghum plastid 75.59 71.78
PGSC0003DMT400050658 Potato plasma membrane 58.66 68.66
GSMUA_Achr8P14230_001 Banana golgi, peroxisome, plasma membrane 66.14 66.93
KRH30604 Soybean peroxisome 68.7 65.85
KRH26509 Soybean peroxisome 68.7 65.85
KRH22855 Soybean peroxisome 68.5 65.66
Solyc11g069760.1.1 Tomato extracellular, plasma membrane 23.62 65.57
GSMUA_Achr11P... Banana cytosol 62.2 65.56
VIT_08s0040g01500.t01 Wine grape golgi, peroxisome, plasma membrane, plastid 68.31 65.35
VIT_06s0061g00320.t01 Wine grape peroxisome 67.72 64.91
Solyc06g010250.2.1 Tomato plasma membrane 63.39 64.66
PGSC0003DMT400031306 Potato plasma membrane 44.69 64.31
PGSC0003DMT400050654 Potato plasma membrane 66.14 64.0
PGSC0003DMT400002924 Potato plasma membrane 66.73 63.96
Bra034142.1-P Field mustard plasma membrane 19.29 63.64
PGSC0003DMT400092589 Potato plasma membrane 66.73 63.48
Solyc11g069750.1.1 Tomato extracellular 65.55 63.43
CDY06298 Canola golgi, peroxisome, plasma membrane 52.56 63.42
AT5G60770.1 Thale cress plasma membrane 65.55 63.19
PGSC0003DMT400031304 Potato plasma membrane 65.75 63.02
CDY32821 Canola cytosol, peroxisome, plasma membrane 57.48 62.93
CDY68730 Canola endoplasmic reticulum, plasma membrane 48.23 62.34
Bra030713.1-P Field mustard golgi, peroxisome, plasma membrane 64.96 62.26
VIT_06s0061g00310.t01 Wine grape plasma membrane 30.51 62.25
Bra002453.1-P Field mustard golgi, peroxisome, plasma membrane, plastid 64.57 62.24
CDX93591 Canola golgi, peroxisome, plasma membrane 56.69 62.07
Bra031610.1-P Field mustard golgi, peroxisome, plasma membrane 64.57 62.0
CDY22704 Canola cytosol, peroxisome, plasma membrane 56.5 61.99
KRH25078 Soybean peroxisome, plasma membrane, plastid, vacuole 54.33 61.88
CDY72274 Canola plasma membrane 42.91 61.76
CDX93592 Canola golgi, peroxisome, plasma membrane 55.91 61.74
CDY31024 Canola endoplasmic reticulum, plasma membrane 18.7 61.69
Bra031611.1-P Field mustard golgi, peroxisome, plasma membrane 61.42 61.66
CDY06299 Canola golgi, peroxisome, plasma membrane 61.42 61.66
Bra018656.1-P Field mustard golgi, peroxisome, plasma membrane 59.06 61.6
CDY70994 Canola golgi, plasma membrane 42.72 61.47
CDY22703 Canola golgi, peroxisome, plasma membrane 60.63 61.35
AT1G08090.1 Thale cress cytosol, peroxisome, plasma membrane 63.98 61.32
Bra038302.1-P Field mustard peroxisome 64.76 61.15
AT3G45060.1 Thale cress peroxisome 64.96 60.89
AT5G60780.1 Thale cress peroxisome 64.57 60.85
Bra037625.1-P Field mustard peroxisome 64.76 60.81
Bra018655.1-P Field mustard golgi, peroxisome, plasma membrane 59.84 60.68
PGSC0003DMT400040689 Potato plasma membrane 62.4 60.5
Bra037626.1-P Field mustard peroxisome 64.76 60.26
Bra002451.1-P Field mustard golgi, peroxisome, plasma membrane 63.39 60.07
CDY69111 Canola peroxisome 56.5 59.79
CDY50324 Canola plasma membrane 56.3 59.58
Bra038301.1-P Field mustard golgi, peroxisome, plasma membrane 63.39 59.3
Bra020230.1-P Field mustard peroxisome 56.89 59.22
AT1G08100.1 Thale cress cytosol, peroxisome, plasma membrane 60.04 58.43
Solyc06g074990.1.1 Tomato plasma membrane 60.43 58.37
CDY26984 Canola plasma membrane 50.0 55.7
CDY53125 Canola plastid 19.68 54.35
CDY31023 Canola endoplasmic reticulum, extracellular 8.86 53.57
HORVU3Hr1G066090.1 Barley plasma membrane 52.95 52.33
CDX99169 Canola cytosol 7.48 50.67
AT4G14358.1 Thale cress cytosol 6.89 40.23
Solyc11g069740.1.1 Tomato cytosol, peroxisome 38.39 37.72
HORVU7Hr1G098550.3 Barley plasma membrane 35.83 37.68
Protein Annotations
EnsemblPlants:HORVU6Hr1G005930.1EnsemblPlantsGene:HORVU6Hr1G005930Gene3D:1.20.1250.20GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0055085InterPro:IPR020846InterPro:MFSInterPro:MFS_dom
InterPro:MFS_trans_sfPANTHER:PTHR23515PANTHER:PTHR23515:SF3PFAM:PF07690SEG:segSUPFAM:SSF103473
TMHMM:TMhelixUniParc:UPI00029668F1UniProt:M0Y2F3MapMan:24.2.2.10MapMan:25.1.3.1:
Description
No Description!
Coordinates
chrchr6H:+:13075246..13077142
Molecular Weight (calculated)
54639.9 Da
IEP (calculated)
7.964
GRAVY (calculated)
0.440
Length
508 amino acids
Sequence
(BLAST)
001: MEMEFASTPT TPAPINFLLP VDSEHKAKSI KIFSFGNPHM RAFHLGWMSF FTCVVSTFAA APLIPIIRDN LNLTKPDIGN AGVASVSGAI FSRLAMGAIC
101: DLLGPRYGCA FLVMLSAPAV FCMSIIDGPG GYITIRFLIG VSLATFVSCQ YWVSTMFNSK IIGTVGGLTA GWGDMGGGAT QLIMPLVFDA ILACGATPFT
201: AWRLAYFVPG MMLVVMGLLV LTMGQDLPDG NLRSLQKNGD MSRDKFSNVL RGAVTNYRTW IFVFIYGYCM GVELTTNNVI AEYYYDSFHL DLRAAGTIAA
301: CFGLANVFAR PMGGYLSDLG ARYFGMRARL WNIWILQTAG GAFCLFLGRA TSLPTSITCM VLYSICVEAA CGAVYGVIPF VSRRSLGLIS GMSGAGGNVG
401: GGLTQFLFFT SSQYSTGKGL QYMGIMVMAC TLPVALVHFP QWGSMLLPPT AGATEEDYYA AEWTEEEKSK GLHNAGVKFA ENSVSERGRR NAILAVPATP
501: PHVTPQHV
Best Arabidopsis Sequence Match ( AT1G08090.1 )
(BLAST)
001: MGDSTGEPGS SMHGVTGREQ SFAFSVQSPI VHTDKTAKFD LPVDTEHKAT VFKLFSFAKP HMRTFHLSWI SFSTCFVSTF AAAPLVPIIR ENLNLTKQDI
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
301: VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV
401: PFVSRRALGI ISGLTGAGGN FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE AHYYGSEWNE QEKQKNMHQG
501: SLRFAENAKS EGGRRVRSAA TPPENTPNNV
Arabidopsis Description
NRT2.1High-affinity nitrate transporter 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O82811]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.