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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 1
  • endoplasmic reticulum 2
  • plasma membrane 4
  • extracellular 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:endoplasmic reticulum
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU5Hr1G115500.4
HORVU6Hr1G053710.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G08090.1 HORVU5Hr1G115500.4 AT5G50200.1 17012411
AT1G08090.1 HORVU6Hr1G053710.1 AT5G50200.1 17012411
AT5G60780.1 HORVU5Hr1G115500.4 AT5G50200.1 17012411
AT5G60780.1 HORVU6Hr1G053710.1 AT5G50200.1 17012411
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6B01G044100.1 Wheat plastid 98.22 98.22
TraesCS6A01G031100.1 Wheat plastid 98.22 98.22
HORVU6Hr1G005570.1 Barley golgi, plasma membrane 52.66 98.16
HORVU6Hr1G005580.1 Barley plastid 99.61 92.66
HORVU6Hr1G005600.2 Barley endoplasmic reticulum 89.55 89.19
HORVU6Hr1G005780.1 Barley endoplasmic reticulum, plasma membrane, vacuole 75.74 83.3
HORVU6Hr1G005720.1 Barley extracellular 61.14 81.79
HORVU6Hr1G005770.1 Barley plasma membrane 81.26 80.94
Zm00001d054060_P001 Maize plastid 83.63 80.92
EES06135 Sorghum golgi, peroxisome, plasma membrane 84.02 80.83
EES04351 Sorghum golgi, peroxisome, plasma membrane 84.02 80.83
Zm00001d054057_P001 Maize extracellular 83.43 80.73
HORVU6Hr1G005930.1 Barley plasma membrane 80.87 80.71
Os02t0112600-01 Rice golgi, plasma membrane, plastid 84.02 79.92
Os02t0112100-01 Rice golgi, plasma membrane, plastid 84.02 79.92
HORVU6Hr1G005750.1 Barley cytosol, plastid 15.19 76.24
Zm00001d014976_P001 Maize plasma membrane 77.71 75.48
EES04350 Sorghum plastid 77.71 73.64
KRH22855 Soybean peroxisome 76.73 73.4
KRH26509 Soybean peroxisome 76.53 73.21
GSMUA_Achr8P14230_001 Banana golgi, peroxisome, plasma membrane 71.99 72.71
KRH30604 Soybean peroxisome 75.94 72.64
PGSC0003DMT400050658 Potato plasma membrane 62.13 72.58
GSMUA_Achr11P... Banana cytosol 68.05 71.58
CDY06298 Canola golgi, peroxisome, plasma membrane 58.97 71.02
VIT_06s0061g00320.t01 Wine grape peroxisome 73.96 70.75
VIT_08s0040g01500.t01 Wine grape golgi, peroxisome, plasma membrane, plastid 73.77 70.43
VIT_06s0061g00310.t01 Wine grape plasma membrane 34.32 69.88
PGSC0003DMT400092589 Potato plasma membrane 73.37 69.66
CDY32821 Canola cytosol, peroxisome, plasma membrane 63.71 69.61
CDX93591 Canola golgi, peroxisome, plasma membrane 63.71 69.61
Bra030713.1-P Field mustard golgi, peroxisome, plasma membrane 72.39 69.25
AT1G08090.1 Thale cress cytosol, peroxisome, plasma membrane 72.39 69.25
CDX93592 Canola golgi, peroxisome, plasma membrane 62.72 69.13
PGSC0003DMT400031306 Potato plasma membrane 48.13 69.12
CDY70994 Canola golgi, plasma membrane 48.13 69.12
CDY72274 Canola plasma membrane 48.13 69.12
CDY22704 Canola cytosol, peroxisome, plasma membrane 63.12 69.11
Bra018656.1-P Field mustard golgi, peroxisome, plasma membrane 66.27 68.99
PGSC0003DMT400002924 Potato plasma membrane 71.99 68.87
Bra031610.1-P Field mustard golgi, peroxisome, plasma membrane 71.79 68.81
Bra018655.1-P Field mustard golgi, peroxisome, plasma membrane 67.65 68.46
CDY22703 Canola golgi, peroxisome, plasma membrane 67.65 68.33
AT5G60770.1 Thale cress plasma membrane 71.01 68.31
CDY06299 Canola golgi, peroxisome, plasma membrane 68.05 68.18
Bra034142.1-P Field mustard plasma membrane 20.71 68.18
Bra031611.1-P Field mustard golgi, peroxisome, plasma membrane 68.05 68.18
Solyc06g010250.2.1 Tomato plasma membrane 66.86 68.07
CDY68730 Canola endoplasmic reticulum, plasma membrane 52.66 67.94
PGSC0003DMT400031304 Potato plasma membrane 71.01 67.92
PGSC0003DMT400050654 Potato plasma membrane 70.22 67.81
Solyc11g069760.1.1 Tomato extracellular, plasma membrane 24.46 67.76
Bra002453.1-P Field mustard golgi, peroxisome, plasma membrane, plastid 70.41 67.74
KRH25078 Soybean peroxisome, plasma membrane, plastid, vacuole 59.37 67.49
Solyc11g069750.1.1 Tomato extracellular 69.82 67.43
AT1G08100.1 Thale cress cytosol, peroxisome, plasma membrane 68.24 66.28
PGSC0003DMT400040689 Potato plasma membrane 66.67 64.5
AT5G60780.1 Thale cress peroxisome 68.24 64.19
Bra002451.1-P Field mustard golgi, peroxisome, plasma membrane 67.46 63.81
Bra038302.1-P Field mustard peroxisome 67.46 63.57
Solyc06g074990.1.1 Tomato plasma membrane 65.88 63.5
CDY50324 Canola plasma membrane 59.96 63.33
CDY69111 Canola peroxisome 59.96 63.33
AT3G45060.1 Thale cress peroxisome 67.65 63.28
Bra037625.1-P Field mustard peroxisome 67.26 63.03
Bra037626.1-P Field mustard peroxisome 67.46 62.64
Bra020230.1-P Field mustard peroxisome 60.16 62.5
CDY31024 Canola endoplasmic reticulum, plasma membrane 18.93 62.34
Bra038301.1-P Field mustard golgi, peroxisome, plasma membrane 65.48 61.14
CDY26984 Canola plasma membrane 54.44 60.53
CDY53125 Canola plastid 20.51 56.52
HORVU3Hr1G066090.1 Barley plasma membrane 55.42 54.67
CDY31023 Canola endoplasmic reticulum, extracellular 8.68 52.38
CDX99169 Canola cytosol 7.3 49.33
AT4G14358.1 Thale cress cytosol 7.3 42.53
Solyc11g069740.1.1 Tomato cytosol, peroxisome 40.24 39.46
HORVU7Hr1G098550.3 Barley plasma membrane 37.28 39.13
Protein Annotations
EnsemblPlants:HORVU6Hr1G005590.1EnsemblPlantsGene:HORVU6Hr1G005590Gene3D:1.20.1250.20GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0055085InterPro:IPR020846InterPro:MFSInterPro:MFS_dom
InterPro:MFS_trans_sfPANTHER:PTHR23515PANTHER:PTHR23515:SF3PFAM:PF07690SEG:segSUPFAM:SSF103473
TMHMM:TMhelixUniParc:UPI000295814FUniProt:M0WL97MapMan:24.2.2.10MapMan:25.1.3.1:
Description
No Description!
Coordinates
chrchr6H:+:12378589..12380579
Molecular Weight (calculated)
54630.5 Da
IEP (calculated)
8.161
GRAVY (calculated)
0.403
Length
507 amino acids
Sequence
(BLAST)
001: MEVEAGAHGD TAASKFTLPV DSEHKAKSFR LFSFANPHMR TFHLSWISFF TCFVSTFAAA PLVPIIRDNL NLAKADIGNA GVASVSGSIF SRLAMGAICD
101: LLGPRYGCAF LVMLSAPTVF CMAVIDDASG YIAVRFLIGF SLATFVSCQY WMSTMFNSKI IGTVNGLAAG WGNMGGGATQ LIMPLVFHAI QKCGATPFVA
201: WRIAYFVPGM MHIVMGLLVL TMGQDLPDGN LASLQKKGDM AKDKFSKVLW GAVTNYRTWI FVLLYGYCMG VELTTDNVIA EYYFDHFHLD LRAAGTIAAC
301: FGMANIVARP AGGYLSDLGA RYFGMRARLW NIWILQTAGG AFCIWLGRAS ALPASVTAMV LFSICAQAAC GAIFGVAPFV SRRSLGIISG LTGAGGNVGA
401: GLTQLLFFTS SQYSTGRGLE YMGIMIMACT LPVALVHFPQ WGSMFFPASA DATEEEYYAS EWSEEEKAKG LHIAGQKFAE NSRSERGRRN VILATSATPP
501: NNTPQHV
Best Arabidopsis Sequence Match ( AT1G08090.1 )
(BLAST)
001: MGDSTGEPGS SMHGVTGREQ SFAFSVQSPI VHTDKTAKFD LPVDTEHKAT VFKLFSFAKP HMRTFHLSWI SFSTCFVSTF AAAPLVPIIR ENLNLTKQDI
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
301: VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV
401: PFVSRRALGI ISGLTGAGGN FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE AHYYGSEWNE QEKQKNMHQG
501: SLRFAENAKS EGGRRVRSAA TPPENTPNNV
Arabidopsis Description
NRT2.1High-affinity nitrate transporter 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O82811]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.