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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plasma membrane 2
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, peroxisome, plasma membrane
BaCelLo:nucleus
MultiLoc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX71613
CDX83019
CDX91545
CDY05799
CDY16372
CDY34047
CDY64637

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G60780.1 CDX71613 AT5G50200.1 17012411
AT5G60780.1 CDX83019 AT5G50200.1 17012411
AT5G60780.1 CDX91545 AT5G50200.1 17012411
AT5G60780.1 CDY05799 AT5G50200.1 17012411
AT5G60780.1 CDY16372 AT5G50200.1 17012411
AT5G60780.1 CDY34047 AT5G50200.1 17012411
AT5G60780.1 CDY64637 AT5G50200.1 17012411
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY69111 Canola peroxisome 97.5 97.5
Bra002451.1-P Field mustard golgi, peroxisome, plasma membrane 98.96 88.62
AT5G60780.1 Thale cress peroxisome 92.08 82.0
HORVU6Hr1G005750.1 Barley cytosol, plastid 15.21 72.28
VIT_06s0061g00310.t01 Wine grape plasma membrane 36.88 71.08
CDY31024 Canola endoplasmic reticulum, plasma membrane 22.5 70.13
CDY53125 Canola plastid 25.42 66.3
KRH22855 Soybean peroxisome 72.92 66.04
CDY72274 Canola plasma membrane 48.33 65.72
KRH30604 Soybean peroxisome 72.5 65.66
KRH26509 Soybean peroxisome 72.5 65.66
VIT_06s0061g00320.t01 Wine grape peroxisome 71.46 64.72
CDY70994 Canola golgi, plasma membrane 47.5 64.59
Solyc06g010250.2.1 Tomato plasma membrane 66.46 64.06
GSMUA_Achr8P14230_001 Banana golgi, peroxisome, plasma membrane 66.46 63.55
PGSC0003DMT400040689 Potato plasma membrane 69.17 63.36
PGSC0003DMT400050654 Potato plasma membrane 69.17 63.24
Solyc11g069750.1.1 Tomato extracellular 68.54 62.67
GSMUA_Achr11P... Banana cytosol 62.92 62.66
CDY31023 Canola endoplasmic reticulum, extracellular 10.83 61.9
HORVU6Hr1G005570.1 Barley golgi, plasma membrane 34.79 61.4
CDY68730 Canola endoplasmic reticulum, plasma membrane 49.79 60.81
CDY06298 Canola golgi, peroxisome, plasma membrane 53.33 60.81
CDY22703 Canola golgi, peroxisome, plasma membrane 63.33 60.56
CDY06299 Canola golgi, peroxisome, plasma membrane 63.75 60.47
TraesCS6D01G035700.1 Wheat plasma membrane 63.54 60.16
TraesCS6B01G044300.1 Wheat plasma membrane 63.33 59.96
TraesCS6D01G035900.1 Wheat plasma membrane 63.33 59.96
HORVU6Hr1G005590.1 Barley plasma membrane 63.33 59.96
TraesCS6A01G030900.1 Wheat plasma membrane 63.12 59.76
TraesCS6D01G035800.1 Wheat plasma membrane 63.12 59.76
TraesCS6A01G030700.1 Wheat plastid 63.12 59.76
TraesCS6A01G031000.1 Wheat plasma membrane 63.12 59.76
TraesCS6A01G031100.1 Wheat plastid 63.12 59.76
TraesCS6B01G044200.1 Wheat plasma membrane 63.12 59.76
KRH25078 Soybean peroxisome, plasma membrane, plastid, vacuole 55.42 59.64
TraesCS6A01G030800.1 Wheat plasma membrane 62.92 59.57
TraesCS6B01G044100.1 Wheat plastid 62.92 59.57
CDX93591 Canola golgi, peroxisome, plasma membrane 57.29 59.27
CDY32821 Canola cytosol, peroxisome, plasma membrane 57.29 59.27
CDX93592 Canola golgi, peroxisome, plasma membrane 56.67 59.13
Os02t0112600-01 Rice golgi, plasma membrane, plastid 65.42 58.91
Os02t0112100-01 Rice golgi, plasma membrane, plastid 65.42 58.91
Zm00001d054060_P001 Maize plastid 64.17 58.78
Zm00001d054057_P001 Maize extracellular 64.17 58.78
EES06135 Sorghum golgi, peroxisome, plasma membrane 64.38 58.63
EES04351 Sorghum golgi, peroxisome, plasma membrane 64.38 58.63
TraesCS6D01G035600.1 Wheat plasma membrane 61.88 58.35
TraesCS6B01G044000.1 Wheat plasma membrane 61.88 58.35
CDY22704 Canola cytosol, peroxisome, plasma membrane 56.25 58.32
TraesCS6A01G031200.1 Wheat plasma membrane 61.46 57.96
TraesCS6D01G037900.1 Wheat plasma membrane 60.83 57.37
CDX99169 Canola cytosol 8.96 57.33
TraesCS6D01G037200.1 Wheat golgi, plasma membrane, plastid 60.62 57.28
TraesCS6A01G032400.1 Wheat plastid 60.62 57.28
TraesCS6A01G032500.1 Wheat plastid 60.62 57.28
HORVU6Hr1G005780.1 Barley endoplasmic reticulum, plasma membrane, vacuole 55.0 57.27
TraesCS6D01G037800.1 Wheat plasma membrane 60.42 57.2
TraesCS6B01G046600.1 Wheat plasma membrane 60.62 57.17
TraesCS6B01G045600.1 Wheat golgi, plasma membrane, vacuole 60.42 57.09
TraesCS6D01G037300.1 Wheat golgi, plasma membrane, plastid 60.42 57.09
TraesCS6A01G033000.1 Wheat plasma membrane 60.42 56.97
TraesCS6A01G032900.1 Wheat golgi, plasma membrane, vacuole 60.21 56.78
TraesCS6B01G045700.1 Wheat plastid 59.79 56.72
Zm00001d014976_P001 Maize plasma membrane 61.67 56.7
TraesCS6D01G038100.1 Wheat golgi, plasma membrane, vacuole 60.0 56.58
TraesCS6A01G033200.1 Wheat plasma membrane 59.79 56.5
HORVU6Hr1G005720.1 Barley extracellular 44.58 56.46
EES04350 Sorghum plastid 62.92 56.45
TraesCS6B01G046500.1 Wheat plasma membrane 59.58 56.41
TraesCS6A01G032800.1 Wheat plasma membrane 59.58 56.41
HORVU6Hr1G005770.1 Barley plasma membrane 59.79 56.39
TraesCS6D01G038300.1 Wheat plasma membrane 59.58 56.3
TraesCS6D01G038200.1 Wheat plasma membrane 59.58 56.3
TraesCS6B01G046700.1 Wheat plasma membrane 59.58 56.3
HORVU6Hr1G005930.1 Barley plasma membrane 59.58 56.3
HORVU6Hr1G005580.1 Barley plastid 63.75 56.15
TraesCS6A01G033100.1 Wheat plasma membrane 59.38 56.1
TraesCS6D01G038000.1 Wheat plasma membrane 59.17 56.02
HORVU6Hr1G005600.2 Barley endoplasmic reticulum 59.17 55.8
TraesCS6B01G044500.1 Wheat plastid 55.21 54.64
TraesCS6B01G044400.1 Wheat plastid 63.75 54.16
CDY26984 Canola plasma membrane 51.04 53.73
TraesCS2D01G073500.1 Wheat plasma membrane 55.62 53.51
TraesCS2A01G074800.1 Wheat plasma membrane 55.83 53.39
CDY21075 Canola plasma membrane 52.5 50.5
CDY34599 Canola plasma membrane 52.29 50.4
CDX85593 Canola golgi, peroxisome, plasma membrane, plastid 38.96 38.64
CDX91044 Canola golgi, peroxisome, plasma membrane, plastid 38.96 37.25
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.10MapMan:25.1.3.1GO:A0A078ILT3UniProt:A0A078ILT3EnsemblPlants:CDY50324
ProteinID:CDY50324ProteinID:CDY50324.1GO:GO:0005575GO:GO:0016020GO:GO:0016021EnsemblPlantsGene:GSBRNA2T00096428001
InterPro:IPR020846InterPro:MFS_domInterPro:MFS_trans_sfPANTHER:PTHR23515PANTHER:PTHR23515:SF3SUPFAM:SSF103473
TMHMM:TMhelixUniParc:UPI0004EDD3D3SEG:seg:::
Description
BnaA10g13570DBnaA10g13570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ILT3]
Coordinates
chrLK032901:+:27811..29899
Molecular Weight (calculated)
52016.2 Da
IEP (calculated)
9.002
GRAVY (calculated)
0.361
Length
480 amino acids
Sequence
(BLAST)
001: MASNEEGSIG TSLHGVTAKE HVFSFSADAS SQVVPSNDPT SKFALPVDSE HRAKVFNPLS FAKPHMRAFH LGWISFFTCF ISTFAAAPLV PIIRDNLDLT
101: KTDIGNAGVA SVSGAIFSRL AMGAVCDLLG ARVMFNGKII GLVNGCAGGW GDMGGGVTQL LMPMVFHVIK LAGATPFMAW RISFFVPGFL QVVMGILVLT
201: FGQDLPDGNL STLQKSGQVF WFAVKNYRTW ILFVLYGFSM GIELTINNVI SGYFFDRFNL KLQTAGIVAA SFGMANFFAR PFGGYASDVA ARLFGMRGRL
301: WILWIFQTVG ALFCIWLGRA NSLPIAVLAM ILFSIGTQAA CGALFGVAPF VSRRSLGLIS GLTGAGGNFG SGLTQLLFFS TSRFSTAEGL SLMGAMAVLC
401: TLPVAFIHFP QWGSMFLRPS RDGERSKEEY YYSSEWTEDE KRQGLHEGSI KFAENSRSER SRKIALADFP TQETGSQTVV
Best Arabidopsis Sequence Match ( AT5G60780.1 )
(BLAST)
001: MTHNHSNEEG SIGTSLHGVT AREQVFSFSV DASSQTVQSD DPTAKFALPV DSEHRAKVFN PLSFAKPHMR AFHLGWLSFF TCFISTFAAA PLVPIIRDNL
101: DLTKTDIGNA GVASVSGAIF SRLAMGAVCD LLGARYGTAF SLMLTAPTVF SMSFVGGPSG YLGVRFMIGF CLATFVSCQY WTSVMFNGKI IGLVNGCAGG
201: WGDMGGGVTQ LLMPMVFHVI KLAGATPFMA WRIAFFVPGF LQVVMGILVL SLGQDLPDGN LSTLQKSGQV SKDKFSKVFW FAVKNYRTWI LFVLYGSSMG
301: IELTINNVIS GYFYDRFNLK LQTAGIVAAS FGMANFIARP FGGYASDVAA RVFGMRGRLW TLWIFQTVGA LFCIWLGRAS SLPIAILAMM LFSIGTQAAC
401: GALFGVAPFV SRRSLGLISG LTGAGGNFGS GLTQLLFFSS ARFSTAEGLS LMGVMAVLCT LPVAFIHFPQ WGSMFLRPST DGERSQEEYY YGSEWTENEK
501: QQGLHEGSIK FAENSRSERG RKVALANIPT PENGTPSHV
Arabidopsis Description
NRT2.3High affinity nitrate transporter 2.3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH7]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.