CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plastid, plasma membrane

Predictor Summary:

nucleus 1
plastid 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane, plastid
Any Predictor:	golgi, nucleus, peroxisome, plasma membrane, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68872
CDX72366
CDX75267
CDY13496

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14570.1	CDX68872	AT4G32650.1	15299147
AT5G14570.1	CDX72366	AT4G32650.1	15299147
AT5G14570.1	CDX75267	AT4G32650.1	15299147
AT5G14570.1	CDY13496	AT4G32650.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85593	Canola	golgi, peroxisome, plasma membrane, plastid	92.63	96.07
AT5G14570.1	Thale cress	plastid	81.87	83.37
PGSC0003DMT400017804	Potato	plasma membrane	54.18	64.15
Solyc02g067790.2.1	Tomato	golgi, peroxisome, plasma membrane	57.37	62.61
VIT_14s0066g00850.t01	Wine grape	plasma membrane	56.37	62.2
GSMUA_Achr1P25450_001	Banana	plasma membrane	51.39	55.48
CDY21075	Canola	plasma membrane	48.21	48.5
CDY34599	Canola	plasma membrane	48.01	48.39
HORVU7Hr1G098550.3	Barley	plasma membrane	44.62	46.38
TraesCS7D01G420900.1	Wheat	golgi, peroxisome, plasma membrane	44.42	46.17
CDY06298	Canola	golgi, peroxisome, plasma membrane	38.45	45.84
Os01t0547600-01	Rice	plasma membrane	44.22	45.77
TraesCS7B01G328700.1	Wheat	golgi, peroxisome, plasma membrane	44.22	45.68
OQU87011	Sorghum	plasma membrane	43.82	45.45
Zm00001d044504_P001	Maize	plasma membrane	42.63	44.12
TraesCS7A01G428500.1	Wheat	golgi, peroxisome, plasma membrane	40.04	42.95
CDX93592	Canola	golgi, peroxisome, plasma membrane	38.65	42.17
CDY06299	Canola	golgi, peroxisome, plasma membrane	42.43	42.09
CDY22703	Canola	golgi, peroxisome, plasma membrane	42.03	42.03
CDX93591	Canola	golgi, peroxisome, plasma membrane	38.45	41.59
CDY32821	Canola	cytosol, peroxisome, plasma membrane	38.45	41.59
Zm00001d025783_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid, vacuole	15.94	41.45
CDY22704	Canola	cytosol, peroxisome, plasma membrane	37.85	41.04
CDY70994	Canola	golgi, plasma membrane	28.09	39.94
CDY72274	Canola	plasma membrane	27.89	39.66
CDY69111	Canola	peroxisome	37.85	39.58
CDY50324	Canola	plasma membrane	37.25	38.96
CDY68730	Canola	endoplasmic reticulum, plasma membrane	30.48	38.93
CDY31024	Canola	endoplasmic reticulum, plasma membrane	11.55	37.66
CDY26984	Canola	plasma membrane	33.27	36.62
Zm00001d016468_P001	Maize	plasma membrane	15.34	35.98
CDY53125	Canola	plastid	12.15	33.15
CDY31023	Canola	endoplasmic reticulum, extracellular	2.59	15.48
CDX99169	Canola	cytosol	2.19	14.67

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.10	MapMan:25.1.3.1	GO:A0A078DRF0	EnsemblPlants:CDX91044	ProteinID:CDX91044
ProteinID:CDX91044.1	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00151812001	InterPro:IPR020846	InterPro:MFS	InterPro:MFS_dom	InterPro:MFS_trans_sf
PFAM:PF07690	PFscan:PS50850	PANTHER:PTHR23515	PANTHER:PTHR23515:SF5	SUPFAM:SSF103473	TMHMM:TMhelix
UniParc:UPI0004EB1BE4	SEG:seg	:	:	:	:

Description

BnaC02g05530D

Coordinates

chrLK031865:+:483704..485522

Molecular Weight (calculated)

53457.6 Da

IEP (calculated)

7.802

GRAVY (calculated)

0.463

Length

502 amino acids

Sequence
(BLAST)

001: MTIGGGHGDS EVLTVMEPPS QRNTETPSFQ NATVPVDSSG RATVFRPFSL SSPHSRAFHL AWLSLFSCFF STFSIPPLIP VISSDLGLSA SAVSAAGTAS
101: FAGSIFSRLA MGPLCDLIGP RTSSAILSLL TAPAILSTAL VSSPTSFVLV RFFVGFSLAN FVANQYWMSS MFSGNVVGLA NGVSAGWANV GAGVSQLLMP
201: ILYTTIAEFL PRDVSWRVSF VFPAVFQVIT AVLVLLYGQD TPDSNRKASN RNKDRTPVEE EHSSFVRILL DGLGDYRAWI LALLYGYSFG VELTTDNMIA
301: GYFYERFGVN LEAAGTIAAS FAISNVASRP AGGMVSDVLG KRYGMRGRLW GLWIVQSVAG LLCLLLGRVN SLWGSIAVMW VFSVFVQAAS GLIFGVVPFV
401: SKRSLGVVAG MTGSGGTVGA VVTQVLLFSG DNVRKQRSIS LMGLMTFVAS LSVTLIYFPR WGGIFCGPSS SSASDDCSQR LLGDEEEDDD KVVISGRLRP
501: VC

Best Arabidopsis Sequence Match ( AT5G14570.1 )
(BLAST)

001: MEPSQRNTKP PSFSDSTIPV DSDGRATVFR PFSLSSPHSR AFHLAWLSLF SCFFSTFSIP PLVPVISSDL NLSASTVSAA GIASFAGSIF SRLAMGPLCD
101: LIGPRTSSAI LSFLTAPVIL SASLVSSPTS FILVRFFVGF SLANFVANQY WMSSMFSGNV IGLANGVSAG WANVGAGISQ LLMPLIYSTI AEFLPRAVAW
201: RVSFVFPAIF QVTTAVLVLL YGQDTPHGNR KNSNQNKLTI PEEEEVLVVE EDERSSFVEI LIGGLGNYRA WILALLYGYS YGVELTTDNV IAGYFYERFG
301: VNLEAAGTIA ASFGISNIAS RPAGGMISDA LGKRFGMRGR LWGLWIVQSV AGLLCVLLGR VNSLWGSILV MWVFSVFVQA ASGLVFGVVP FVSTRSLGVV
401: AGITGSGGTV GAVVTQFLLF SGDDVRKQRS ISLMGLMTFV FALSVTSIYF PQWGGMCCGP SSSSEEEDIS RGLLVEDEDE EGKVVSGSLR PVC

Arabidopsis Description

NRT2.7NRT2.7 [Source:UniProtKB/TrEMBL;Acc:A0A178UKX9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.