Factsheet for Solyc02g067790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

nucleus 1
golgi 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g010080.2.1
Solyc08g068000.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14570.1	Solyc01g010080.2.1	AT4G32650.1	15299147
AT5G14570.1	Solyc08g068000.1.1	AT4G32650.1	15299147

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017804	Potato	plasma membrane	88.91	96.46
VIT_14s0066g00850.t01	Wine grape	plasma membrane	70.87	71.65
AT5G14570.1	Thale cress	plastid	63.7	59.43
CDX85593	Canola	golgi, peroxisome, plasma membrane, plastid	61.96	58.88
GSMUA_Achr1P25450_001	Banana	plasma membrane	59.35	58.71
Bra023475.1-P	Field mustard	plastid	61.3	58.26
CDX91044	Canola	golgi, peroxisome, plasma membrane, plastid	62.61	57.37
TraesCS7D01G420900.1	Wheat	golgi, peroxisome, plasma membrane	48.7	46.38
OQU87011	Sorghum	plasma membrane	48.7	46.28
HORVU7Hr1G098550.3	Barley	plasma membrane	48.48	46.17
TraesCS7B01G328700.1	Wheat	golgi, peroxisome, plasma membrane	48.48	45.88
Zm00001d044504_P001	Maize	plasma membrane	47.83	45.36
Os01t0547600-01	Rice	plasma membrane	47.83	45.36
Solyc06g010250.2.1	Tomato	plasma membrane	46.96	43.37
Solyc11g069750.1.1	Tomato	extracellular	48.91	42.86
TraesCS7A01G428500.1	Wheat	golgi, peroxisome, plasma membrane	43.48	42.73
Zm00001d025783_P001	Maize	extracellular, mitochondrion, plasma membrane, plastid, vacuole	17.61	41.97
Solyc06g074990.1.1	Tomato	plasma membrane	46.96	41.06
Solyc11g069760.1.1	Tomato	extracellular, plasma membrane	15.65	39.34
Zm00001d016468_P001	Maize	plasma membrane	16.96	36.45
Solyc11g069740.1.1	Tomato	cytosol, peroxisome	26.96	23.98

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.10	MapMan:25.1.3.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005886	GO:GO:0006810
GO:GO:0008150	GO:GO:0009705	GO:GO:0009987	GO:GO:0015112	GO:GO:0015706	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	GO:GO:0071249	InterPro:IPR020846	UniProt:K4B7B1	InterPro:MFS
InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF07690	PFscan:PS50850	PANTHER:PTHR23515	PANTHER:PTHR23515:SF5
SUPFAM:SSF103473	EnsemblPlantsGene:Solyc02g067790.2	EnsemblPlants:Solyc02g067790.2.1	TMHMM:TMhelix	UniParc:UPI0002767595	SEG:seg

Description

High affinity nitrate transporter 2.7 [Source:Projected from Arabidopsis thaliana (AT5G14570) UniProtKB/Swiss-Prot;Acc:Q9LYK2]

Coordinates

chr2:+:37900235..37903379

Molecular Weight (calculated)

50008.3 Da

IEP (calculated)

8.919

GRAVY (calculated)

0.564

Length

460 amino acids

Sequence
(BLAST)

001: MEEEQSHSKI DQSPNNFSIA VDYDHKATEF RPFSLSSPHM RAFHLAWLSL FSCFFSTFAI PPLLEVIRKD LNLTQTDIGT AGIASFVGSI FSRLAMGPAC
101: DVFGPRVASA TLSLLTAPVV LSTSLISSAK SFILVRFLIG FSLANFVASQ FWMSSMFSGC TVGLANGFAA GWANVGSGVT QLVMPLVYTL FTTCFNIPSF
201: ISWRIAFIFP AIFQAATAIL VLVYGQDLPD GNYKRKITNN QSENVLFNGL KNYRGWILGL TYGFCFGVEL TTDNIIAAYF YNRFHVNIEM AGAIAASFGL
301: ANCVSRPVGG IVSDKMGKRF GMRGRLWSLW AVQTVAGLMC VLLGRVNTIL ASVLVMACFS LFVQAASGLT FGIVPFVSKR SLGVISGMTG SGGTLGAVIT
401: QLLLFSGSTK FSTQTSISIM GLMMIVFTLP ITLIYFPKWG GMFCGPSNIH QYDENYHLIH

Best Arabidopsis Sequence Match ( AT5G14570.1 )
(BLAST)

001: MEPSQRNTKP PSFSDSTIPV DSDGRATVFR PFSLSSPHSR AFHLAWLSLF SCFFSTFSIP PLVPVISSDL NLSASTVSAA GIASFAGSIF SRLAMGPLCD
101: LIGPRTSSAI LSFLTAPVIL SASLVSSPTS FILVRFFVGF SLANFVANQY WMSSMFSGNV IGLANGVSAG WANVGAGISQ LLMPLIYSTI AEFLPRAVAW
201: RVSFVFPAIF QVTTAVLVLL YGQDTPHGNR KNSNQNKLTI PEEEEVLVVE EDERSSFVEI LIGGLGNYRA WILALLYGYS YGVELTTDNV IAGYFYERFG
301: VNLEAAGTIA ASFGISNIAS RPAGGMISDA LGKRFGMRGR LWGLWIVQSV AGLLCVLLGR VNSLWGSILV MWVFSVFVQA ASGLVFGVVP FVSTRSLGVV
401: AGITGSGGTV GAVVTQFLLF SGDDVRKQRS ISLMGLMTFV FALSVTSIYF PQWGGMCCGP SSSSEEEDIS RGLLVEDEDE EGKVVSGSLR PVC

Arabidopsis Description

NRT2.7NRT2.7 [Source:UniProtKB/TrEMBL;Acc:A0A178UKX9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.