Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- golgi 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc03g112090.2.1 | |
| Solyc03g112100.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G60780.1 | Solyc03g112090.2.1 | AT5G50200.1 | 17012411 |
| AT5G60780.1 | Solyc03g112100.2.1 | AT5G50200.1 | 17012411 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400050654 | Potato | plasma membrane | 97.33 | 97.33 |
| Solyc06g010250.2.1 | Tomato | plasma membrane | 78.29 | 82.53 |
| HORVU6Hr1G005750.1 | Barley | cytosol, plastid | 14.48 | 75.25 |
| VIT_06s0061g00310.t01 | Wine grape | plasma membrane | 35.05 | 73.9 |
| Bra034142.1-P | Field mustard | plasma membrane | 21.33 | 72.73 |
| KRH26509 | Soybean | peroxisome | 72.38 | 71.7 |
| VIT_06s0061g00320.t01 | Wine grape | peroxisome | 72.38 | 71.7 |
| KRH22855 | Soybean | peroxisome | 72.19 | 71.51 |
| KRH30604 | Soybean | peroxisome | 71.62 | 70.94 |
| TraesCS6B01G044200.1 | Wheat | plasma membrane | 67.62 | 70.02 |
| TraesCS6D01G035900.1 | Wheat | plasma membrane | 67.43 | 69.82 |
| TraesCS6A01G031000.1 | Wheat | plasma membrane | 67.43 | 69.82 |
| HORVU6Hr1G005590.1 | Barley | plasma membrane | 67.43 | 69.82 |
| TraesCS6B01G044100.1 | Wheat | plastid | 67.43 | 69.82 |
| TraesCS6B01G044300.1 | Wheat | plasma membrane | 67.43 | 69.82 |
| TraesCS6D01G035800.1 | Wheat | plasma membrane | 67.43 | 69.82 |
| TraesCS6D01G035700.1 | Wheat | plasma membrane | 67.43 | 69.82 |
| TraesCS6A01G030700.1 | Wheat | plastid | 67.24 | 69.63 |
| TraesCS6A01G030800.1 | Wheat | plasma membrane | 67.24 | 69.63 |
| TraesCS6A01G031100.1 | Wheat | plastid | 67.24 | 69.63 |
| TraesCS6A01G030900.1 | Wheat | plasma membrane | 67.05 | 69.43 |
| Solyc11g069760.1.1 | Tomato | extracellular, plasma membrane | 24.0 | 68.85 |
| HORVU6Hr1G005570.1 | Barley | golgi, plasma membrane | 35.62 | 68.75 |
| CDY69111 | Canola | peroxisome | 62.67 | 68.54 |
| CDY50324 | Canola | plasma membrane | 62.67 | 68.54 |
| GSMUA_Achr8P14230_001 | Banana | golgi, peroxisome, plasma membrane | 65.52 | 68.53 |
| AT5G60780.1 | Thale cress | peroxisome | 70.29 | 68.46 |
| AT3G45060.1 | Thale cress | peroxisome | 70.67 | 68.45 |
| Bra020230.1-P | Field mustard | peroxisome | 63.43 | 68.24 |
| Bra037625.1-P | Field mustard | peroxisome | 70.29 | 68.21 |
| Bra002451.1-P | Field mustard | golgi, peroxisome, plasma membrane | 69.52 | 68.1 |
| Bra038302.1-P | Field mustard | peroxisome | 69.33 | 67.66 |
| EES06135 | Sorghum | golgi, peroxisome, plasma membrane | 67.81 | 67.55 |
| EES04351 | Sorghum | golgi, peroxisome, plasma membrane | 67.81 | 67.55 |
| Bra037626.1-P | Field mustard | peroxisome | 70.1 | 67.4 |
| TraesCS6B01G044000.1 | Wheat | plasma membrane | 65.33 | 67.39 |
| Zm00001d054060_P001 | Maize | plastid | 67.05 | 67.18 |
| TraesCS6A01G031200.1 | Wheat | plasma membrane | 64.95 | 66.99 |
| Zm00001d054057_P001 | Maize | extracellular | 66.86 | 66.98 |
| CDY31024 | Canola | endoplasmic reticulum, plasma membrane | 19.62 | 66.88 |
| TraesCS6D01G035600.1 | Wheat | plasma membrane | 64.76 | 66.8 |
| Os02t0112100-01 | Rice | golgi, plasma membrane, plastid | 67.81 | 66.79 |
| Os02t0112600-01 | Rice | golgi, plasma membrane, plastid | 67.81 | 66.79 |
| TraesCS6A01G032400.1 | Wheat | plastid | 64.57 | 66.73 |
| HORVU6Hr1G005780.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 58.48 | 66.59 |
| TraesCS6A01G032500.1 | Wheat | plastid | 64.38 | 66.54 |
| TraesCS6D01G037200.1 | Wheat | golgi, plasma membrane, plastid | 64.19 | 66.34 |
| TraesCS6B01G045600.1 | Wheat | golgi, plasma membrane, vacuole | 64.19 | 66.34 |
| TraesCS6B01G046500.1 | Wheat | plasma membrane | 64.0 | 66.27 |
| TraesCS6B01G045700.1 | Wheat | plastid | 63.81 | 66.21 |
| GSMUA_Achr11P... | Banana | cytosol | 60.76 | 66.18 |
| TraesCS6D01G037300.1 | Wheat | golgi, plasma membrane, plastid | 64.0 | 66.14 |
| TraesCS6D01G037800.1 | Wheat | plasma membrane | 63.81 | 66.08 |
| KRH25078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 56.0 | 65.92 |
| TraesCS6D01G037900.1 | Wheat | plasma membrane | 63.81 | 65.82 |
| TraesCS6B01G046700.1 | Wheat | plasma membrane | 63.62 | 65.75 |
| Bra038301.1-P | Field mustard | golgi, peroxisome, plasma membrane | 68.0 | 65.75 |
| TraesCS6A01G032800.1 | Wheat | plasma membrane | 63.43 | 65.68 |
| TraesCS6D01G038100.1 | Wheat | golgi, plasma membrane, vacuole | 63.62 | 65.62 |
| TraesCS6A01G033000.1 | Wheat | plasma membrane | 63.62 | 65.62 |
| HORVU6Hr1G005930.1 | Barley | plasma membrane | 63.43 | 65.55 |
| TraesCS6D01G038200.1 | Wheat | plasma membrane | 63.43 | 65.55 |
| HORVU6Hr1G005720.1 | Barley | extracellular | 47.24 | 65.44 |
| TraesCS6B01G046600.1 | Wheat | plasma membrane | 63.43 | 65.42 |
| TraesCS6A01G033200.1 | Wheat | plasma membrane | 63.24 | 65.35 |
| TraesCS6A01G033100.1 | Wheat | plasma membrane | 63.24 | 65.35 |
| TraesCS6D01G038300.1 | Wheat | plasma membrane | 63.24 | 65.35 |
| HORVU6Hr1G005770.1 | Barley | plasma membrane | 63.24 | 65.23 |
| HORVU6Hr1G005600.2 | Barley | endoplasmic reticulum | 63.24 | 65.23 |
| HORVU6Hr1G005580.1 | Barley | plastid | 67.62 | 65.14 |
| TraesCS6A01G032900.1 | Wheat | golgi, plasma membrane, vacuole | 63.05 | 65.03 |
| TraesCS6B01G044500.1 | Wheat | plastid | 59.43 | 64.33 |
| Zm00001d014976_P001 | Maize | plasma membrane | 63.43 | 63.79 |
| TraesCS6D01G038000.1 | Wheat | plasma membrane | 61.52 | 63.71 |
| TraesCS6B01G044400.1 | Wheat | plastid | 68.0 | 63.19 |
| EES04350 | Sorghum | plastid | 64.0 | 62.8 |
| TraesCS2A01G074800.1 | Wheat | plasma membrane | 59.62 | 62.35 |
| TraesCS2D01G073500.1 | Wheat | plasma membrane | 59.05 | 62.12 |
| Solyc06g074990.1.1 | Tomato | plasma membrane | 61.9 | 61.79 |
| CDY53125 | Canola | plastid | 21.14 | 60.33 |
| CDY31023 | Canola | endoplasmic reticulum, extracellular | 8.19 | 51.19 |
| Solyc02g067790.2.1 | Tomato | golgi, peroxisome, plasma membrane | 42.86 | 48.91 |
| CDX99169 | Canola | cytosol | 6.67 | 46.67 |
| AT4G14358.1 | Thale cress | cytosol | 6.67 | 40.23 |
| Solyc11g069740.1.1 | Tomato | cytosol, peroxisome | 39.24 | 39.85 |
Protein Annotations
| Gene3D:1.20.1250.20 | MapMan:24.2.2.10 | MapMan:25.1.3.1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009705 | GO:GO:0009987 | GO:GO:0015112 | GO:GO:0015706 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | GO:GO:0071249 | InterPro:IPR020846 | UniProt:K4DAD1 | InterPro:MFS |
| InterPro:MFS_dom | InterPro:MFS_trans_sf | PFAM:PF07690 | PFscan:PS50850 | PANTHER:PTHR23515 | PANTHER:PTHR23515:SF3 |
| SUPFAM:SSF103473 | EnsemblPlantsGene:Solyc11g069750.1 | EnsemblPlants:Solyc11g069750.1.1 | TMHMM:TMhelix | UniParc:UPI00027693D7 | SEG:seg |
Description
No Description!
Coordinates
chr11:+:54356645..54358559
Molecular Weight (calculated)
57492.9 Da
IEP (calculated)
9.022
GRAVY (calculated)
0.358
Length
525 amino acids
Sequence
(BLAST)
(BLAST)
001: MATFESPLGR EQTFAFSITS QNVCNNSQSN KFDLPVDSEH KAKSIKIFSF AQPHMRSFHL AWISFFTCFI STFAAAPLVP IIRDNLNLTR ADIGNAGVAS
101: VSGSIFSRLI MGVLCDLIGP RYGCAFLNLL TAPIVFSVAF ISNAEGYIAM RFLVGFSLAT FVSCQYWTSV MFNSQIIGLV NGVAGGWGDM GGGVTQLLMP
201: FLFHIIKLTG ATPYTAWRIA FFIPGWLHII IGLMVLILGQ DLPDGNLSTL QKKGDVTKDQ FSKVLRNAVT NYRTWVFFLL YGFSMGVELC INNVIAEYFY
301: DKFNLKLHTA GMIAATFGMA NFVARPFGGY ASDLAARKFG MRGRLWVLWI VQTTGGAFCI WLGRAESLPI AIVSMILFSI GAQAACGATY GIIPFVSRRS
401: LGLISGLTGA GGNFGGGLTQ LLFFSTTRFS TGMGLTWMGL MAIACTVPVA FVHFPQWGSM FFPASNDGKY NEENYYESEW TENEKQKGLH LASVKFAENS
501: RSERGKKQVV TSIATSTYSS SPEHV
101: VSGSIFSRLI MGVLCDLIGP RYGCAFLNLL TAPIVFSVAF ISNAEGYIAM RFLVGFSLAT FVSCQYWTSV MFNSQIIGLV NGVAGGWGDM GGGVTQLLMP
201: FLFHIIKLTG ATPYTAWRIA FFIPGWLHII IGLMVLILGQ DLPDGNLSTL QKKGDVTKDQ FSKVLRNAVT NYRTWVFFLL YGFSMGVELC INNVIAEYFY
301: DKFNLKLHTA GMIAATFGMA NFVARPFGGY ASDLAARKFG MRGRLWVLWI VQTTGGAFCI WLGRAESLPI AIVSMILFSI GAQAACGATY GIIPFVSRRS
401: LGLISGLTGA GGNFGGGLTQ LLFFSTTRFS TGMGLTWMGL MAIACTVPVA FVHFPQWGSM FFPASNDGKY NEENYYESEW TENEKQKGLH LASVKFAENS
501: RSERGKKQVV TSIATSTYSS SPEHV
001: MADGFGEPGS SMHGVTGREQ SYAFSVESPA VPSDSSAKFS LPVDTEHKAK VFKLLSFEAP HMRTFHLAWI SFFTCFISTF AAAPLVPIIR DNLNLTRQDV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVGG AGGYITVRFM IGFCLATFVS CQYWMSTMFN GQIIGLVNGT AAGWGNMGGG
201: VTQLLMPMVY EIIRRLGSTS FTAWRMAFFV PGWMHIIMGI LVLTLGQDLP DGNRSTLEKK GAVTKDKFSK VLWYAITNYR TWVFVLLYGY SMGVELTTDN
301: VIAEYFFDRF HLKLHTAGII AASFGMANFF ARPIGGWASD IAARRFGMRG RLWTLWIIQT LGGFFCLWLG RATTLPTAVV FMILFSLGAQ AACGATFAII
401: PFISRRSLGI ISGLTGAGGN FGSGLTQLVF FSTSTFSTEQ GLTWMGVMIM ACTLPVTLVH FPQWGSMFLP STEDEVKSTE EYYYMKEWTE TEKRKGMHEG
501: SLKFAVNSRS ERGRRVASAP SPPPEHV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVGG AGGYITVRFM IGFCLATFVS CQYWMSTMFN GQIIGLVNGT AAGWGNMGGG
201: VTQLLMPMVY EIIRRLGSTS FTAWRMAFFV PGWMHIIMGI LVLTLGQDLP DGNRSTLEKK GAVTKDKFSK VLWYAITNYR TWVFVLLYGY SMGVELTTDN
301: VIAEYFFDRF HLKLHTAGII AASFGMANFF ARPIGGWASD IAARRFGMRG RLWTLWIIQT LGGFFCLWLG RATTLPTAVV FMILFSLGAQ AACGATFAII
401: PFISRRSLGI ISGLTGAGGN FGSGLTQLVF FSTSTFSTEQ GLTWMGVMIM ACTLPVTLVH FPQWGSMFLP STEDEVKSTE EYYYMKEWTE TEKRKGMHEG
501: SLKFAVNSRS ERGRRVASAP SPPPEHV
Arabidopsis Description
NRT2.4High affinity nitrate transporter 2.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.