Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 6
- golgi 6
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g010250.2.1 | |
| Solyc11g069750.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G50200.1 | Solyc06g010250.2.1 | AT5G60780.1 | 17012411 |
| AT5G50200.1 | Solyc11g069750.1.1 | AT5G60780.1 | 17012411 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH03862 | Soybean | endoplasmic reticulum, extracellular | 38.26 | 21.15 |
| VIT_17s0000g09470.t01 | Wine grape | endoplasmic reticulum, vacuole | 36.52 | 20.9 |
| Solyc03g112100.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 36.52 | 20.69 |
| KRH57152 | Soybean | endoplasmic reticulum, extracellular | 36.52 | 20.19 |
| Bra033790.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 35.65 | 19.9 |
| CDX83019 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 35.65 | 19.9 |
| GSMUA_Achr9P01940_001 | Banana | endoplasmic reticulum | 33.91 | 19.7 |
| GSMUA_Achr6P12130_001 | Banana | endoplasmic reticulum, extracellular | 33.91 | 19.5 |
| Bra013828.1-P | Field mustard | cytosol | 25.22 | 18.83 |
| CDY03424 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 32.17 | 17.79 |
| AT5G50200.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 32.17 | 17.62 |
| Zm00001d017095_P001 | Maize | extracellular | 30.43 | 17.24 |
| TraesCS6D01G193100.1 | Wheat | extracellular | 29.57 | 17.17 |
| TraesCS6B01G238700.1 | Wheat | extracellular | 29.57 | 17.17 |
| TraesCS6A01G209900.1 | Wheat | extracellular | 29.57 | 17.17 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 30.43 | 17.16 |
| EES07094 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 31.3 | 17.06 |
| CDY34047 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 30.43 | 16.99 |
| CDY64637 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 30.43 | 16.99 |
| Bra000613.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 30.43 | 16.99 |
| TraesCS6D01G193200.2 | Wheat | plasma membrane | 28.7 | 16.67 |
| TraesCS6B01G238800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 28.7 | 16.67 |
| HORVU6Hr1G053710.1 | Barley | extracellular | 28.7 | 16.67 |
| CDX91545 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 30.43 | 16.51 |
| TraesCS5D01G506100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 27.83 | 16.08 |
| CDY16372 | Canola | extracellular | 29.57 | 16.04 |
| Bra022511.1-P | Field mustard | extracellular | 29.57 | 16.04 |
| Bra037934.1-P | Field mustard | endoplasmic reticulum, extracellular | 28.7 | 15.87 |
| Zm00001d003287_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 26.96 | 15.74 |
| CDX71613 | Canola | endoplasmic reticulum, extracellular | 28.7 | 15.57 |
| Os02t0595900-01 | Rice | plasma membrane | 27.83 | 15.53 |
| Os04t0480200-01 | Rice | plasma membrane | 26.96 | 14.76 |
| KXG26563 | Sorghum | extracellular, plasma membrane, vacuole | 27.83 | 14.75 |
| AT4G24715.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 29.57 | 14.72 |
| CDY34305 | Canola | extracellular, plasma membrane, plastid | 33.04 | 14.5 |
| TraesCS6A01G210000.1 | Wheat | endoplasmic reticulum | 27.83 | 12.75 |
| HORVU5Hr1G115500.4 | Barley | mitochondrion, plastid | 28.7 | 12.6 |
| TraesCS4A01G367300.1 | Wheat | plastid | 27.83 | 12.55 |
| CDY05799 | Canola | cytosol, endoplasmic reticulum, plastid | 6.09 | 6.19 |
Protein Annotations
| EnsemblPlants:Solyc03g112090.2.1 | EnsemblPlantsGene:Solyc03g112090.2 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010167 | GO:GO:0015706 |
| InterPro:Transptr_NO3_Nar2 | PANTHER:PTHR34806 | PANTHER:PTHR34806:SF1 | PFAM:PF16974 | UniParc:UPI00027692F0 | UniProt:K4BK63 |
| MapMan:25.1.3.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3:-:62613193..62614837
Molecular Weight (calculated)
13352.8 Da
IEP (calculated)
8.382
GRAVY (calculated)
-0.177
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MATFSGIFVA SAIVFSFLWN YDYLCCSFLF PSANYPNQFF TFTKTSCTDS NYKTVDVKLC YAPVSQLDRG WRKSNNNLKK DKTCQINLVT IPYQPSSNNF
101: TWDYRQGCSC CYLFH
101: TWDYRQGCSC CYLFH
001: MRHMCDTHLV VLPYQDHILI RIMAIHTLLF VSLLIFSLIE SSSGGKKDRL FTDLQNSIEV TAKPVKDSGV LEAGKDMVTI TWKLKSSSAK VDTDTAFKTI
101: QVKLCYAPIS QVDRPWRKTD NKLFKDRSCP HEIVSKAYDK TPQSLDWTIG LDIPTGTYFV RAYGIDGDGH EVAYGQSTDE GRTTNLFSVH AISGHHVGLD
201: IASTFFSVFS VVSLFVFFVM EKRKAKLEQR E
101: QVKLCYAPIS QVDRPWRKTD NKLFKDRSCP HEIVSKAYDK TPQSLDWTIG LDIPTGTYFV RAYGIDGDGH EVAYGQSTDE GRTTNLFSVH AISGHHVGLD
201: IASTFFSVFS VVSLFVFFVM EKRKAKLEQR E
Arabidopsis Description
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.