Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- endoplasmic reticulum 4
- plasma membrane 5
- plastid 1
- extracellular 4
- vacuole 3
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013828.1-P | Field mustard | cytosol | 48.92 | 73.38 |
| CDY03424 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 61.47 | 68.27 |
| AT5G50200.1 | Thale cress | endoplasmic reticulum, extracellular, plasma membrane | 56.71 | 62.38 |
| CDY34305 | Canola | extracellular, plasma membrane, plastid | 61.04 | 53.82 |
| VIT_17s0000g09470.t01 | Wine grape | endoplasmic reticulum, vacuole | 45.45 | 52.24 |
| KRH57152 | Soybean | endoplasmic reticulum, extracellular | 44.16 | 49.04 |
| KRH03862 | Soybean | endoplasmic reticulum, extracellular | 43.72 | 48.56 |
| Solyc03g112100.2.1 | Tomato | endoplasmic reticulum, extracellular, plasma membrane | 41.13 | 46.8 |
| GSMUA_Achr6P12130_001 | Banana | endoplasmic reticulum, extracellular | 40.26 | 46.5 |
| GSMUA_Achr9P01940_001 | Banana | endoplasmic reticulum | 39.39 | 45.96 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane | 38.96 | 44.12 |
| EES07094 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 34.63 | 37.91 |
| HORVU6Hr1G053710.1 | Barley | extracellular | 32.47 | 37.88 |
| TraesCS6D01G193200.2 | Wheat | plasma membrane | 32.47 | 37.88 |
| TraesCS6D01G193100.1 | Wheat | extracellular | 32.47 | 37.88 |
| TraesCS6B01G238700.1 | Wheat | extracellular | 32.47 | 37.88 |
| TraesCS6A01G209900.1 | Wheat | extracellular | 32.47 | 37.88 |
| Os02t0595900-01 | Rice | plasma membrane | 33.77 | 37.86 |
| TraesCS6B01G238800.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 32.03 | 37.37 |
| TraesCS5D01G506100.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 32.03 | 37.19 |
| Zm00001d017095_P001 | Maize | extracellular | 32.47 | 36.95 |
| Zm00001d003287_P001 | Maize | endoplasmic reticulum, plasma membrane, vacuole | 29.87 | 35.03 |
| Os04t0480200-01 | Rice | plasma membrane | 29.0 | 31.9 |
| KXG26563 | Sorghum | extracellular, plasma membrane, vacuole | 29.0 | 30.88 |
| Solyc03g112090.2.1 | Tomato | extracellular | 14.72 | 29.57 |
| TraesCS6A01G210000.1 | Wheat | endoplasmic reticulum | 31.6 | 29.08 |
| TraesCS4A01G367300.1 | Wheat | plastid | 32.03 | 29.02 |
| HORVU5Hr1G115500.4 | Barley | mitochondrion, plastid | 32.03 | 28.24 |
| PGSC0003DMT400046695 | Potato | endoplasmic reticulum, golgi, plasma membrane | 38.1 | 26.59 |
Protein Annotations
| MapMan:25.1.3.2 | ArrayExpress:AT4G24715 | EnsemblPlantsGene:AT4G24715 | EnsemblPlants:AT4G24715.1 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010167 |
| GO:GO:0015706 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0042128 | PFAM:PF16974 | PIRSF:PIRSF012939 |
| PANTHER:PTHR34806 | PANTHER:PTHR34806:SF1 | TMHMM:TMhelix | InterPro:Transptr_NO3_Nar2 | UniParc:UPI0001E93026 | SEG:seg |
Description
No Description!
Coordinates
chr4:-:12749278..12750997
Molecular Weight (calculated)
25991.3 Da
IEP (calculated)
8.113
GRAVY (calculated)
-0.099
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MRHMCDTHLV VLPYQDHILI RIMAIHTLLF VSLLIFSLIE SSSGGKKDRL FTDLQNSIEV TAKPVKDSGV LEAGKDMVTI TWKLKSSSAK VDTDTAFKTI
101: QVKLCYAPIS QVDRPWRKTD NKLFKDRSCP HEIVSKAYDK TPQSLDWTIG LDIPTGTYFV RAYGIDGDGH EVAYGQSTDE GRTTNLFSVH AISGHHVGLD
201: IASTFFSVFS VVSLFVFFVM EKRKAKLEQR E
101: QVKLCYAPIS QVDRPWRKTD NKLFKDRSCP HEIVSKAYDK TPQSLDWTIG LDIPTGTYFV RAYGIDGDGH EVAYGQSTDE GRTTNLFSVH AISGHHVGLD
201: IASTFFSVFS VVSLFVFFVM EKRKAKLEQR E
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.