Factsheet for HORVU6Hr1G053710.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G005570.1
HORVU6Hr1G005580.1
HORVU6Hr1G005590.1
HORVU6Hr1G005600.2
HORVU6Hr1G005720.1
HORVU6Hr1G005750.1
HORVU6Hr1G005770.1
HORVU6Hr1G005780.1
HORVU6Hr1G005930.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50200.1	HORVU6Hr1G005570.1	AT1G08090.1	17012411
AT5G50200.1	HORVU6Hr1G005580.1	AT1G08090.1	17012411
AT5G50200.1	HORVU6Hr1G005590.1	AT1G08090.1	17012411
AT5G50200.1	HORVU6Hr1G005600.2	AT1G08090.1	17012411
AT5G50200.1	HORVU6Hr1G005720.1	AT1G08090.1	17012411
AT5G50200.1	HORVU6Hr1G005750.1	AT1G08090.1	17012411
AT5G50200.1	HORVU6Hr1G005770.1	AT1G08090.1	17012411
AT5G50200.1	HORVU6Hr1G005780.1	AT1G08090.1	17012411
AT5G50200.1	HORVU6Hr1G005930.1	AT1G08090.1	17012411
AT5G50200.1	HORVU6Hr1G005570.1	AT5G60780.1	17012411
AT5G50200.1	HORVU6Hr1G005580.1	AT5G60780.1	17012411
AT5G50200.1	HORVU6Hr1G005590.1	AT5G60780.1	17012411
AT5G50200.1	HORVU6Hr1G005600.2	AT5G60780.1	17012411
AT5G50200.1	HORVU6Hr1G005720.1	AT5G60780.1	17012411
AT5G50200.1	HORVU6Hr1G005750.1	AT5G60780.1	17012411
AT5G50200.1	HORVU6Hr1G005770.1	AT5G60780.1	17012411
AT5G50200.1	HORVU6Hr1G005780.1	AT5G60780.1	17012411
AT5G50200.1	HORVU6Hr1G005930.1	AT5G60780.1	17012411

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G193100.1	Wheat	extracellular	96.97	96.97
TraesCS6B01G238700.1	Wheat	extracellular	96.97	96.97
TraesCS6A01G209900.1	Wheat	extracellular	96.46	96.46
HORVU5Hr1G115500.4	Barley	mitochondrion, plastid	88.89	67.18
Zm00001d017095_P001	Maize	extracellular	61.62	60.1
GSMUA_Achr6P12130_001	Banana	endoplasmic reticulum, extracellular	57.07	56.5
EES07094	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	59.6	55.92
Os02t0595900-01	Rice	plasma membrane	56.57	54.37
GSMUA_Achr9P01940_001	Banana	endoplasmic reticulum	53.54	53.54
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	53.03	51.47
VIT_17s0000g09470.t01	Wine grape	endoplasmic reticulum, vacuole	52.02	51.24
KRH57152	Soybean	endoplasmic reticulum, extracellular	50.51	48.08
KRH03862	Soybean	endoplasmic reticulum, extracellular	50.51	48.08
Bra000613.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	42.93	41.26
CDY34047	Canola	endoplasmic reticulum, extracellular, plasma membrane	42.93	41.26
CDY64637	Canola	endoplasmic reticulum, extracellular, plasma membrane	42.93	41.26
AT5G50200.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	43.43	40.95
Solyc03g112100.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	41.41	40.39
Bra033790.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	41.92	40.29
CDX83019	Canola	endoplasmic reticulum, extracellular, plasma membrane	41.92	40.29
Bra013828.1-P	Field mustard	cytosol	29.8	38.31
CDX91545	Canola	endoplasmic reticulum, extracellular, plasma membrane	40.91	38.21
CDX71613	Canola	endoplasmic reticulum, extracellular	40.4	37.74
Bra037934.1-P	Field mustard	endoplasmic reticulum, extracellular	39.39	37.5
CDY16372	Canola	extracellular	39.39	36.79
Bra022511.1-P	Field mustard	extracellular	39.39	36.79
CDY03424	Canola	endoplasmic reticulum, extracellular, plasma membrane	38.38	36.54
CDY05799	Canola	cytosol, endoplasmic reticulum, plastid	20.2	35.4
AT4G24715.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	37.88	32.47
CDY34305	Canola	extracellular, plasma membrane, plastid	38.38	29.01
Solyc03g112090.2.1	Tomato	extracellular	16.67	28.7
PGSC0003DMT400046695	Potato	endoplasmic reticulum, golgi, plasma membrane	43.94	26.28

Protein Annotations

EMBL:AY253450	EnsemblPlants:HORVU6Hr1G053710.1	EnsemblPlantsGene:HORVU6Hr1G053710	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0010167	GO:GO:0015706	GO:GO:0016020	GO:GO:0016021	InterPro:Transptr_NO3_Nar2	PANTHER:PTHR34806
PFAM:PF16974	PFscan:PS51257	PIRSF:PIRSF012939	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI000035E42F	UniProt:Q6X677	MapMan:25.1.3.2	:	:	:

Description

NAR2.3 [Source:UniProtKB/TrEMBL;Acc:Q6X677]

Coordinates

chrchr6H:-:336809019..336810586

Molecular Weight (calculated)

21138.4 Da

IEP (calculated)

9.491

GRAVY (calculated)

0.110

Length

198 amino acids

Sequence
(BLAST)

001: MARQGMVTAL LLLVLAAGCC ASAGAVAYLS KLPVTLDVTA SPTPGQVLHA GEDVITVTWA LNASQPAGKD ADYKNVKVSL CYAPVSQKER EWRKTHDDLK
101: KDKTCQFKIT QQAYPGAGKV EYRVALDIPT ATYYVRAYAL DASGTQVAYG QTAPTAAFNV VSITGVTTSI KVAAGVFSAF SVASLAFFFF IEKRKKNN

Best Arabidopsis Sequence Match ( AT5G50200.1 )
(BLAST)

001: MAIQKILFAS LLICSLIQSI HGAEKVRLFK ELDKGALDVT TKPSREGPGV VLDAGKDTLN ITWTLSSIGS KREAEFKIIK VKLCYAPPSQ VDRPWRKTHD
101: ELFKDKTCPH KIIAKPYDKT LQSTTWTLER DIPTGTYFVR AYAVDAIGHE VAYGQSTDDA KKTNLFSVQA ISGRHASLDI ASICFSVFSV VALVVFFVNE
201: KRKAKIEQSK

Arabidopsis Description

NRT3.1High-affinity nitrate transporter 3.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGS5]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.