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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • cytosol 1
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, plasma membrane
MultiLoc:cytosol
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU5Hr1G115500.4
HORVU6Hr1G053710.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G08090.1 HORVU5Hr1G115500.4 AT5G50200.1 17012411
AT1G08090.1 HORVU6Hr1G053710.1 AT5G50200.1 17012411
AT5G60780.1 HORVU5Hr1G115500.4 AT5G50200.1 17012411
AT5G60780.1 HORVU6Hr1G053710.1 AT5G50200.1 17012411
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G037900.1 Wheat plasma membrane 97.84 97.84
TraesCS6A01G032900.1 Wheat golgi, plasma membrane, vacuole 97.64 97.64
TraesCS6D01G038000.1 Wheat plasma membrane 93.91 94.28
HORVU6Hr1G005780.1 Barley endoplasmic reticulum, plasma membrane, vacuole 84.09 92.84
HORVU6Hr1G005750.1 Barley cytosol, plastid 18.27 92.08
HORVU6Hr1G005930.1 Barley plasma membrane 90.96 91.14
HORVU6Hr1G005720.1 Barley extracellular 67.39 90.5
HORVU6Hr1G005570.1 Barley golgi, plasma membrane 44.6 83.46
HORVU6Hr1G005590.1 Barley plasma membrane 80.94 81.26
HORVU6Hr1G005600.2 Barley endoplasmic reticulum 78.39 78.39
HORVU6Hr1G005580.1 Barley plastid 81.34 75.96
Os02t0112600-01 Rice golgi, plasma membrane, plastid 76.82 73.36
Os02t0112100-01 Rice golgi, plasma membrane, plastid 76.82 73.36
Zm00001d054057_P001 Maize extracellular 75.25 73.09
Zm00001d054060_P001 Maize plastid 75.05 72.9
EES06135 Sorghum golgi, peroxisome, plasma membrane 74.46 71.92
EES04351 Sorghum golgi, peroxisome, plasma membrane 74.46 71.92
Zm00001d014976_P001 Maize plasma membrane 73.48 71.65
EES04350 Sorghum plastid 74.66 71.03
PGSC0003DMT400050658 Potato plasma membrane 58.15 68.2
KRH30604 Soybean peroxisome 69.55 66.79
GSMUA_Achr8P14230_001 Banana golgi, peroxisome, plasma membrane 65.62 66.53
KRH22855 Soybean peroxisome 69.16 66.42
KRH26509 Soybean peroxisome 68.96 66.23
VIT_08s0040g01500.t01 Wine grape golgi, peroxisome, plasma membrane, plastid 68.57 65.72
GSMUA_Achr11P... Banana cytosol 61.49 64.94
VIT_06s0061g00320.t01 Wine grape peroxisome 67.39 64.72
PGSC0003DMT400092589 Potato plasma membrane 67.19 64.04
PGSC0003DMT400031306 Potato plasma membrane 44.4 64.02
Solyc06g010250.2.1 Tomato plasma membrane 62.48 63.86
PGSC0003DMT400002924 Potato plasma membrane 66.4 63.77
PGSC0003DMT400050654 Potato plasma membrane 65.62 63.62
AT5G60770.1 Thale cress plasma membrane 65.82 63.57
CDY06298 Canola golgi, peroxisome, plasma membrane 52.46 63.42
Solyc11g069760.1.1 Tomato extracellular, plasma membrane 22.79 63.39
CDY68730 Canola endoplasmic reticulum, plasma membrane 48.92 63.36
Solyc11g069750.1.1 Tomato extracellular 65.23 63.24
VIT_06s0061g00310.t01 Wine grape plasma membrane 30.84 63.05
PGSC0003DMT400031304 Potato plasma membrane 65.62 63.02
Bra002453.1-P Field mustard golgi, peroxisome, plasma membrane, plastid 65.23 63.0
Bra034142.1-P Field mustard plasma membrane 19.06 62.99
CDY32821 Canola cytosol, peroxisome, plasma membrane 57.37 62.93
CDY22704 Canola cytosol, peroxisome, plasma membrane 56.97 62.63
KRH25078 Soybean peroxisome, plasma membrane, plastid, vacuole 54.81 62.56
Bra030713.1-P Field mustard golgi, peroxisome, plasma membrane 64.83 62.26
AT1G08090.1 Thale cress cytosol, peroxisome, plasma membrane 64.83 62.26
Bra018656.1-P Field mustard golgi, peroxisome, plasma membrane 59.53 62.22
Bra031610.1-P Field mustard golgi, peroxisome, plasma membrane 64.64 62.19
CDX93592 Canola golgi, peroxisome, plasma membrane 56.19 62.17
CDX93591 Canola golgi, peroxisome, plasma membrane 56.58 62.07
CDY22703 Canola golgi, peroxisome, plasma membrane 61.1 61.95
CDY70994 Canola golgi, plasma membrane 42.83 61.76
CDY72274 Canola plasma membrane 42.83 61.76
Bra031611.1-P Field mustard golgi, peroxisome, plasma membrane 61.3 61.66
CDY06299 Canola golgi, peroxisome, plasma membrane 61.3 61.66
AT5G60780.1 Thale cress peroxisome 65.23 61.6
AT3G45060.1 Thale cress peroxisome 65.23 61.25
Bra038302.1-P Field mustard peroxisome 64.64 61.15
Bra018655.1-P Field mustard golgi, peroxisome, plasma membrane 60.12 61.08
PGSC0003DMT400040689 Potato plasma membrane 62.87 61.07
CDY31024 Canola endoplasmic reticulum, plasma membrane 18.47 61.04
Bra037625.1-P Field mustard peroxisome 64.64 60.81
Bra002451.1-P Field mustard golgi, peroxisome, plasma membrane 63.65 60.45
CDY50324 Canola plasma membrane 56.39 59.79
Bra037626.1-P Field mustard peroxisome 64.05 59.71
CDY69111 Canola peroxisome 56.19 59.58
Bra020230.1-P Field mustard peroxisome 56.97 59.43
AT1G08100.1 Thale cress cytosol, peroxisome, plasma membrane 60.71 59.2
Bra038301.1-P Field mustard golgi, peroxisome, plasma membrane 63.06 59.12
Solyc06g074990.1.1 Tomato plasma membrane 60.12 58.17
CDY26984 Canola plasma membrane 50.69 56.58
CDY53125 Canola plastid 19.65 54.35
CDY31023 Canola endoplasmic reticulum, extracellular 8.84 53.57
HORVU3Hr1G066090.1 Barley plasma membrane 53.63 53.11
CDX99169 Canola cytosol 7.66 52.0
AT4G14358.1 Thale cress cytosol 6.88 40.23
HORVU7Hr1G098550.3 Barley plasma membrane 36.15 38.1
Solyc11g069740.1.1 Tomato cytosol, peroxisome 38.11 37.52
Protein Annotations
EnsemblPlants:HORVU6Hr1G005770.1EnsemblPlantsGene:HORVU6Hr1G005770Gene3D:1.20.1250.20GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0016020GO:GO:0016021GO:GO:0055085InterPro:IPR020846InterPro:MFSInterPro:MFS_dom
InterPro:MFS_trans_sfPANTHER:PTHR23515PANTHER:PTHR23515:SF3PFAM:PF07690SEG:segSUPFAM:SSF103473
TMHMM:TMhelixUniParc:UPI000B472A80UniProt:A0A287T7S8MapMan:24.2.2.10MapMan:25.1.3.1:
Description
No Description!
Coordinates
chrchr6H:+:12754340..12756226
Molecular Weight (calculated)
54556.7 Da
IEP (calculated)
7.925
GRAVY (calculated)
0.425
Length
509 amino acids
Sequence
(BLAST)
001: METEVGSPAA ATAVPTNFSL PVDSEHKAKS IKIFSFGNPH MRAFHLGWMS FFCCVVSTFA AAPLIPIIRD NLNLTKADIG NAGVASVSGA IFSRLAMGAI
101: CDLLGPRYGC AFLVMLSAPA VFCMSVIDGP GGYITIRFLI GVSLATFVSC QYWISTMFNS KIIGTVGGLT AGWGDMGGGA TQLIMPLVFD GILACGATSF
201: TAWRIAYFVP GIMLVVMGLL VLAMGQDLPD GNLRSLQKNG DMNKDKFSKV LRGAVTNYRT WIFVFIYGYC MGVELTTNNI IAEYYYDSFH LDLRAAGTIA
301: ASFGLANIFA RPMGGYLSDL GARYFGMRAR LWNIWILQTA GGVFCICLGR ASSLPTSVTC MVLYSICVEA ACGAVYGVIP FVSRRSLGLI SGMSGAGGNV
401: GGGLTQFLFF TSSQYTTGKG LQYMGIMIMV CTLPVALVHF PQWGSMLLPP NADATEEEYY GAEWTEEEKS KGLHIAGQKF AENSISERGK RNAILAVPTS
501: PPNNTPQHV
Best Arabidopsis Sequence Match ( AT5G60770.1 )
(BLAST)
001: MADGFGEPGS SMHGVTGREQ SYAFSVESPA VPSDSSAKFS LPVDTEHKAK VFKLLSFEAP HMRTFHLAWI SFFTCFISTF AAAPLVPIIR DNLNLTRQDV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVGG AGGYITVRFM IGFCLATFVS CQYWMSTMFN GQIIGLVNGT AAGWGNMGGG
201: VTQLLMPMVY EIIRRLGSTS FTAWRMAFFV PGWMHIIMGI LVLTLGQDLP DGNRSTLEKK GAVTKDKFSK VLWYAITNYR TWVFVLLYGY SMGVELTTDN
301: VIAEYFFDRF HLKLHTAGII AASFGMANFF ARPIGGWASD IAARRFGMRG RLWTLWIIQT LGGFFCLWLG RATTLPTAVV FMILFSLGAQ AACGATFAII
401: PFISRRSLGI ISGLTGAGGN FGSGLTQLVF FSTSTFSTEQ GLTWMGVMIM ACTLPVTLVH FPQWGSMFLP STEDEVKSTE EYYYMKEWTE TEKRKGMHEG
501: SLKFAVNSRS ERGRRVASAP SPPPEHV
Arabidopsis Description
NRT2.4High affinity nitrate transporter 2.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH8]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.