Factsheet for HORVU6Hr1G005780.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G115500.4
HORVU6Hr1G053710.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08090.1	HORVU5Hr1G115500.4	AT5G50200.1	17012411
AT1G08090.1	HORVU6Hr1G053710.1	AT5G50200.1	17012411
AT5G60780.1	HORVU5Hr1G115500.4	AT5G50200.1	17012411
AT5G60780.1	HORVU6Hr1G053710.1	AT5G50200.1	17012411

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G005720.1	Barley	extracellular	74.4	90.5
TraesCS6B01G046500.1	Wheat	plasma membrane	98.48	89.55
TraesCS6D01G037800.1	Wheat	plasma membrane	97.83	88.95
TraesCS6A01G032800.1	Wheat	plasma membrane	97.4	88.56
HORVU6Hr1G005930.1	Barley	plasma membrane	94.14	85.43
HORVU6Hr1G005770.1	Barley	plasma membrane	92.84	84.09
HORVU6Hr1G005570.1	Barley	golgi, plasma membrane	48.81	82.72
HORVU6Hr1G005590.1	Barley	plasma membrane	83.3	75.74
HORVU6Hr1G005600.2	Barley	endoplasmic reticulum	82.86	75.05
HORVU6Hr1G005580.1	Barley	plastid	83.51	70.64
Zm00001d054057_P001	Maize	extracellular	78.96	69.47
Os02t0112600-01	Rice	golgi, plasma membrane, plastid	80.26	69.42
Os02t0112100-01	Rice	golgi, plasma membrane, plastid	80.26	69.42
Zm00001d054060_P001	Maize	plastid	78.74	69.27
PGSC0003DMT400050658	Potato	plasma membrane	64.43	68.43
EES04351	Sorghum	golgi, peroxisome, plasma membrane	77.87	68.12
EES06135	Sorghum	golgi, peroxisome, plasma membrane	77.87	68.12
Zm00001d014976_P001	Maize	plasma membrane	76.14	67.24
EES04350	Sorghum	plastid	77.44	66.73
PGSC0003DMT400031306	Potato	plasma membrane	49.67	64.87
Solyc11g069760.1.1	Tomato	extracellular, plasma membrane	25.6	64.48
Bra034142.1-P	Field mustard	plasma membrane	21.04	62.99
VIT_06s0061g00310.t01	Wine grape	plasma membrane	33.84	62.65
CDY31024	Canola	endoplasmic reticulum, plasma membrane	20.82	62.34
GSMUA_Achr8P14230_001	Banana	golgi, peroxisome, plasma membrane	67.68	62.15
CDY68730	Canola	endoplasmic reticulum, plasma membrane	52.93	62.09
KRH26509	Soybean	peroxisome	71.37	62.08
CDY72274	Canola	plasma membrane	47.51	62.04
CDY70994	Canola	golgi, plasma membrane	47.51	62.04
KRH22855	Soybean	peroxisome	70.72	61.51
KRH30604	Soybean	peroxisome	70.72	61.51
VIT_08s0040g01500.t01	Wine grape	golgi, peroxisome, plasma membrane, plastid	70.72	61.39
GSMUA_Achr11P...	Banana	cytosol	63.56	60.79
PGSC0003DMT400002924	Potato	plasma membrane	68.98	60.0
Solyc06g010250.2.1	Tomato	plasma membrane	64.64	59.84
PGSC0003DMT400092589	Potato	plasma membrane	69.2	59.74
PGSC0003DMT400031304	Potato	plasma membrane	68.33	59.43
VIT_06s0061g00320.t01	Wine grape	peroxisome	68.33	59.43
PGSC0003DMT400050654	Potato	plasma membrane	67.03	58.86
Solyc11g069750.1.1	Tomato	extracellular	66.59	58.48
AT5G60770.1	Thale cress	plasma membrane	66.81	58.44
Bra031611.1-P	Field mustard	golgi, peroxisome, plasma membrane	63.99	58.3
CDY06299	Canola	golgi, peroxisome, plasma membrane	63.99	58.3
CDY22703	Canola	golgi, peroxisome, plasma membrane	63.34	58.17
AT1G08090.1	Thale cress	cytosol, peroxisome, plasma membrane	66.81	58.11
Bra002453.1-P	Field mustard	golgi, peroxisome, plasma membrane, plastid	65.94	57.69
CDY22704	Canola	cytosol, peroxisome, plasma membrane	57.92	57.67
CDY32821	Canola	cytosol, peroxisome, plasma membrane	57.92	57.54
AT5G60780.1	Thale cress	peroxisome	67.25	57.51
Bra031610.1-P	Field mustard	golgi, peroxisome, plasma membrane	65.94	57.47
Bra030713.1-P	Field mustard	golgi, peroxisome, plasma membrane	65.94	57.36
CDY06298	Canola	golgi, peroxisome, plasma membrane	52.28	57.24
KRH25078	Soybean	peroxisome, plasma membrane, plastid, vacuole	55.31	57.17
Bra018656.1-P	Field mustard	golgi, peroxisome, plasma membrane	60.3	57.08
CDX93591	Canola	golgi, peroxisome, plasma membrane	57.27	56.9
Bra038302.1-P	Field mustard	peroxisome	66.38	56.88
CDX93592	Canola	golgi, peroxisome, plasma membrane	56.62	56.74
PGSC0003DMT400040689	Potato	plasma membrane	64.43	56.68
AT3G45060.1	Thale cress	peroxisome	66.59	56.64
Bra037625.1-P	Field mustard	peroxisome	65.94	56.19
Bra002451.1-P	Field mustard	golgi, peroxisome, plasma membrane	65.08	55.97
CDY31023	Canola	endoplasmic reticulum, extracellular	10.2	55.95
Solyc06g074990.1.1	Tomato	plasma membrane	63.77	55.89
Bra018655.1-P	Field mustard	golgi, peroxisome, plasma membrane	60.74	55.89
Bra037626.1-P	Field mustard	peroxisome	65.73	55.49
AT1G08100.1	Thale cress	cytosol, peroxisome, plasma membrane	62.69	55.36
CDY69111	Canola	peroxisome	57.48	55.21
CDY50324	Canola	plasma membrane	57.27	55.0
Bra020230.1-P	Field mustard	peroxisome	58.13	54.92
Bra038301.1-P	Field mustard	golgi, peroxisome, plasma membrane	64.43	54.7
CDX99169	Canola	cytosol	8.89	54.67
CDY53125	Canola	plastid	21.69	54.35
CDY26984	Canola	plasma membrane	53.36	53.95
HORVU6Hr1G005750.1	Barley	cytosol, plastid	11.71	53.47
HORVU3Hr1G066090.1	Barley	plasma membrane	54.01	48.44
HORVU7Hr1G098550.3	Barley	plasma membrane	37.31	35.61
Solyc11g069740.1.1	Tomato	cytosol, peroxisome	37.74	33.66
AT4G14358.1	Thale cress	cytosol	3.47	18.39

Protein Annotations

EnsemblPlants:HORVU6Hr1G005780.1	EnsemblPlantsGene:HORVU6Hr1G005780	Gene3D:1.20.1250.20	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:IPR020846	InterPro:MFS	InterPro:MFS_dom
InterPro:MFS_trans_sf	PANTHER:PTHR23515	PANTHER:PTHR23515:SF3	PFAM:PF07690	SEG:seg	SUPFAM:SSF103473
TMHMM:TMhelix	UniParc:UPI000B463389	UniProt:A0A287T7S5	MapMan:24.2.2.10	MapMan:25.1.3.1	:

Description

No Description!

Coordinates

chrchr6H:-:12765305..12766893

Molecular Weight (calculated)

49346.4 Da

IEP (calculated)

7.759

GRAVY (calculated)

0.482

Length

461 amino acids

Sequence
(BLAST)

001: MSFFTCVVST FAAAPLIPII RDNLNLTKAD IGNAGVASVS GAIFSRLAMG AICDLLGPRY GCAFLVMLSA PAVFCMSIID GPAGYITIRF LIGVSLATFV
101: SCQYWVSTMF NSKIIGTVGG LTAGWGDMGG GATQLIMPLV FDAIIASGAT PFTAWRIAYF VPGLMLVVMG LLVLTMGQDL PDGNLRSLQK NGDMNKDKFS
201: NVLRGAVTNY RTWIFVFIYG YCMGVELTTN NVIAEYYYDS FHLDLRAAGT IAACFGLANI FARPMGGYLS DLGARYFGMR ARLWNIWILQ TAGGAFCLCL
301: GRASTLPTSI TCMVLYSICV EAACGAVYGV IPFVSRRSLG LISGMSGAGG NVGGGLTQFL FFTSSQYSTG KGLQYMGIMV MACTLPVALV HFPQWGSMLL
401: PPSTDAAEED YYGAEWTEEE RNKGLHIASL KFAENSISER GRRNAILAAP ATPSNNTPQH V

Best Arabidopsis Sequence Match ( AT1G08090.1 )
(BLAST)

001: MGDSTGEPGS SMHGVTGREQ SFAFSVQSPI VHTDKTAKFD LPVDTEHKAT VFKLFSFAKP HMRTFHLSWI SFSTCFVSTF AAAPLVPIIR ENLNLTKQDI
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
301: VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV
401: PFVSRRALGI ISGLTGAGGN FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE AHYYGSEWNE QEKQKNMHQG
501: SLRFAENAKS EGGRRVRSAA TPPENTPNNV

Arabidopsis Description

NRT2.1High-affinity nitrate transporter 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O82811]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.