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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, cytosol

Predictor Summary:
  • plastid 2
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plastid
Any Predictor:cytosol, plastid
ChloroP:plastid
MultiLoc:cytosol
WoLF PSORT:cytosol
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU5Hr1G115500.4
HORVU6Hr1G053710.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G08090.1 HORVU5Hr1G115500.4 AT5G50200.1 17012411
AT1G08090.1 HORVU6Hr1G053710.1 AT5G50200.1 17012411
AT5G60780.1 HORVU5Hr1G115500.4 AT5G50200.1 17012411
AT5G60780.1 HORVU6Hr1G053710.1 AT5G50200.1 17012411
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT4G14358.1 Thale cress cytosol 23.76 27.59
TraesCS6D01G037300.1 Wheat golgi, plasma membrane, plastid 98.02 19.49
TraesCS6D01G037200.1 Wheat golgi, plasma membrane, plastid 98.02 19.49
TraesCS6A01G032400.1 Wheat plastid 97.03 19.29
TraesCS6B01G045600.1 Wheat golgi, plasma membrane, vacuole 96.04 19.09
TraesCS6A01G032500.1 Wheat plastid 96.04 19.09
TraesCS6B01G045700.1 Wheat plastid 94.06 18.77
HORVU6Hr1G005770.1 Barley plasma membrane 92.08 18.27
HORVU6Hr1G005930.1 Barley plasma membrane 91.09 18.11
CDY06298 Canola golgi, peroxisome, plasma membrane 70.3 16.86
KRH25078 Soybean peroxisome, plasma membrane, plastid, vacuole 70.3 15.92
CDY32821 Canola cytosol, peroxisome, plasma membrane 71.29 15.52
CDX93592 Canola golgi, peroxisome, plasma membrane 70.3 15.43
GSMUA_Achr8P14230_001 Banana golgi, peroxisome, plasma membrane 76.24 15.34
CDY22704 Canola cytosol, peroxisome, plasma membrane 70.3 15.33
EES04350 Sorghum plastid 81.19 15.33
CDX93591 Canola golgi, peroxisome, plasma membrane 70.3 15.3
CDY50324 Canola plasma membrane 72.28 15.21
CDY69111 Canola peroxisome 72.28 15.21
HORVU6Hr1G005590.1 Barley plasma membrane 76.24 15.19
Zm00001d014976_P001 Maize plasma membrane 77.23 14.94
EES06135 Sorghum golgi, peroxisome, plasma membrane 77.23 14.8
EES04351 Sorghum golgi, peroxisome, plasma membrane 77.23 14.8
PGSC0003DMT400050654 Potato plasma membrane 76.24 14.67
Bra018656.1-P Field mustard golgi, peroxisome, plasma membrane 70.3 14.58
Solyc11g069750.1.1 Tomato extracellular 75.25 14.48
VIT_06s0061g00320.t01 Wine grape peroxisome 75.25 14.34
Zm00001d054057_P001 Maize extracellular 74.26 14.31
Zm00001d054060_P001 Maize plastid 74.26 14.31
HORVU6Hr1G005580.1 Barley plastid 77.23 14.31
Os02t0112100-01 Rice golgi, plasma membrane, plastid 75.25 14.26
Os02t0112600-01 Rice golgi, plasma membrane, plastid 75.25 14.26
Bra018655.1-P Field mustard golgi, peroxisome, plasma membrane 70.3 14.17
KRH22855 Soybean peroxisome 74.26 14.15
KRH26509 Soybean peroxisome 74.26 14.15
KRH30604 Soybean peroxisome 74.26 14.15
Solyc06g010250.2.1 Tomato plasma membrane 69.31 14.06
Bra020230.1-P Field mustard peroxisome 67.33 13.93
Bra002451.1-P Field mustard golgi, peroxisome, plasma membrane 72.28 13.62
Bra030713.1-P Field mustard golgi, peroxisome, plasma membrane 71.29 13.58
HORVU6Hr1G005600.2 Barley endoplasmic reticulum 68.32 13.56
Bra037626.1-P Field mustard peroxisome 73.27 13.55
AT5G60780.1 Thale cress peroxisome 72.28 13.54
Solyc11g069740.1.1 Tomato cytosol, peroxisome 69.31 13.54
Bra037625.1-P Field mustard peroxisome 72.28 13.49
Bra002453.1-P Field mustard golgi, peroxisome, plasma membrane, plastid 70.3 13.47
AT5G60770.1 Thale cress plasma membrane 70.3 13.47
Bra038301.1-P Field mustard golgi, peroxisome, plasma membrane 72.28 13.44
Bra031610.1-P Field mustard golgi, peroxisome, plasma membrane 70.3 13.42
AT1G08100.1 Thale cress cytosol, peroxisome, plasma membrane 69.31 13.41
AT1G08090.1 Thale cress cytosol, peroxisome, plasma membrane 69.31 13.21
PGSC0003DMT400002924 Potato plasma membrane 69.31 13.21
VIT_08s0040g01500.t01 Wine grape golgi, peroxisome, plasma membrane, plastid 69.31 13.18
PGSC0003DMT400040689 Potato plasma membrane 68.32 13.17
PGSC0003DMT400092589 Potato plasma membrane 69.31 13.11
AT3G45060.1 Thale cress peroxisome 70.3 13.1
CDY22703 Canola golgi, peroxisome, plasma membrane 64.36 12.95
CDY06299 Canola golgi, peroxisome, plasma membrane 64.36 12.85
Bra031611.1-P Field mustard golgi, peroxisome, plasma membrane 64.36 12.85
PGSC0003DMT400031304 Potato plasma membrane 67.33 12.83
Bra038302.1-P Field mustard peroxisome 68.32 12.83
HORVU6Hr1G005780.1 Barley endoplasmic reticulum, plasma membrane, vacuole 53.47 11.71
GSMUA_Achr11P... Banana cytosol 55.45 11.62
HORVU3Hr1G066090.1 Barley plasma membrane 58.42 11.48
Solyc06g074990.1.1 Tomato plasma membrane 59.41 11.41
HORVU7Hr1G098550.3 Barley plasma membrane 35.64 7.45
PGSC0003DMT400050658 Potato plasma membrane 22.77 5.3
CDY26984 Canola plasma membrane 12.87 2.85
VIT_06s0061g00310.t01 Wine grape plasma membrane 3.96 1.61
CDY68730 Canola endoplasmic reticulum, plasma membrane 5.94 1.53
CDX99169 Canola cytosol 0.0 0.0
Solyc11g069760.1.1 Tomato extracellular, plasma membrane 0.0 0.0
PGSC0003DMT400031306 Potato plasma membrane 0.0 0.0
HORVU6Hr1G005570.1 Barley golgi, plasma membrane 0.0 0.0
CDY72274 Canola plasma membrane 0.0 0.0
CDY70994 Canola golgi, plasma membrane 0.0 0.0
CDY53125 Canola plastid 0.0 0.0
HORVU6Hr1G005720.1 Barley extracellular 0.0 0.0
Bra034142.1-P Field mustard plasma membrane 0.0 0.0
CDY31023 Canola endoplasmic reticulum, extracellular 0.0 0.0
CDY31024 Canola endoplasmic reticulum, plasma membrane 0.0 0.0
Protein Annotations
EnsemblPlants:HORVU6Hr1G005750.1EnsemblPlantsGene:HORVU6Hr1G005750Gene3D:1.20.1250.20GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:MFS_trans_sfPANTHER:PTHR23515PANTHER:PTHR23515:SF3SUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI000B47857E
UniProt:A0A287T7S3MapMan:35.1::::
Description
No Description!
Coordinates
chrchr6H:-:12719205..12719621
Molecular Weight (calculated)
10656.9 Da
IEP (calculated)
7.516
GRAVY (calculated)
0.370
Length
101 amino acids
Sequence
(BLAST)
001: MEMEMGSTGA TGASTNFSLP VDSEHKAKSI KIFSFGNPHM RAFHLGWMSF FTCVVSTFAA APLIPIIRDN LNLTKADIGN AGVASVSGAI FSRLAMGAIC
101: D
Best Arabidopsis Sequence Match ( AT3G45060.1 )
(BLAST)
001: MAHNHSNEDG SIGTSLHGVT AREQVFSFSV QEDVPSSQAV RTNDPTAKFA LPVDSEHRAK VFKPLSFAKP HMRAFHLGWI SFFTCFISTF AAAPLVPVIR
101: DNLDLTKTDI GNAGVASVSG AIFSRLAMGA VCDLLGARYG TAFSLMLTAP AVFSMSFVAD AGSYLAVRFM IGFCLATFVS CQYWTSVMFT GKIIGLVNGC
201: AGGWGDMGGG VTQLLMPMVF HVIKLTGATP FTAWRFAFFI PGILQIVMGI LVLTLGQDLP DGNLSTLQKS GQVSKDKFSK VFWFAVKNYR TWILFMLYGF
301: SMGVELTINN VISGYFYDRF NLTLHTAGII AASFGMANFF ARPFGGYASD VAARLFGMRG RLWILWILQT VGALFCIWLG RASSLPIAIL AMMLFSMGTQ
401: AACGALFGVA PFVSRRSLGL ISGLTGAGGN FGSGVTQLLF FSSSRFSTAE GLSLMGVMAV VCSLPVAFIH FPQWGSMFLR PSQDGEKSKE EHYYGAEWTE
501: EEKSLGLHEG SIKFAENSRS ERGRKAMLAD IPTPETGSPA HV
Arabidopsis Description
NRT2.6High affinity nitrate transporter 2.6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXH0]
SUBAcon: [peroxisome]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.