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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • golgi 1
  • mitochondrion 1
  • plastid 2
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:golgi, mitochondrion, plastid
MultiLoc:golgi
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plastid
 extracellular: 20408568
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Zm00001d003287_P001
Zm00001d017095_P001

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G08090.1 Zm00001d003287_P001 AT5G50200.1 17012411
AT1G08090.1 Zm00001d017095_P001 AT5G50200.1 17012411
AT5G60780.1 Zm00001d003287_P001 AT5G50200.1 17012411
AT5G60780.1 Zm00001d017095_P001 AT5G50200.1 17012411
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d054060_P001 Maize plastid 99.81 99.81
EES06135 Sorghum golgi, peroxisome, plasma membrane 94.27 93.74
EES04351 Sorghum golgi, peroxisome, plasma membrane 94.08 93.55
Os02t0112100-01 Rice golgi, plasma membrane, plastid 88.55 87.05
Os02t0112600-01 Rice golgi, plasma membrane, plastid 88.55 87.05
TraesCS6A01G030900.1 Wheat plasma membrane 81.49 84.22
TraesCS6A01G030700.1 Wheat plastid 81.3 84.02
TraesCS6D01G035900.1 Wheat plasma membrane 81.3 84.02
TraesCS6A01G031000.1 Wheat plasma membrane 81.11 83.83
TraesCS6A01G030800.1 Wheat plasma membrane 80.92 83.63
TraesCS6A01G031100.1 Wheat plastid 80.92 83.63
TraesCS6B01G044200.1 Wheat plasma membrane 80.92 83.63
TraesCS6B01G044300.1 Wheat plasma membrane 80.92 83.63
HORVU6Hr1G005590.1 Barley plasma membrane 80.73 83.43
TraesCS6B01G044100.1 Wheat plastid 80.73 83.43
TraesCS6D01G035700.1 Wheat plasma membrane 80.73 83.43
TraesCS6D01G035800.1 Wheat plasma membrane 80.73 83.43
TraesCS6D01G035600.1 Wheat plasma membrane 80.73 83.1
TraesCS6A01G031200.1 Wheat plasma membrane 80.53 82.91
HORVU6Hr1G005570.1 Barley golgi, plasma membrane 42.75 82.35
TraesCS6B01G044000.1 Wheat plasma membrane 79.96 82.32
HORVU6Hr1G005600.2 Barley endoplasmic reticulum 77.86 80.16
HORVU6Hr1G005780.1 Barley endoplasmic reticulum, plasma membrane, vacuole 69.47 78.96
HORVU6Hr1G005580.1 Barley plastid 80.92 77.8
GSMUA_Achr8P14230_001 Banana golgi, peroxisome, plasma membrane 74.24 77.49
TraesCS6A01G032400.1 Wheat plastid 74.81 77.17
TraesCS6B01G046500.1 Wheat plasma membrane 74.62 77.12
HORVU6Hr1G005720.1 Barley extracellular 55.73 77.04
TraesCS6A01G032500.1 Wheat plastid 74.43 76.77
TraesCS6D01G037300.1 Wheat golgi, plasma membrane, plastid 74.43 76.77
TraesCS6D01G037800.1 Wheat plasma membrane 74.24 76.73
Zm00001d014976_P001 Maize plasma membrane 76.34 76.63
TraesCS6A01G032800.1 Wheat plasma membrane 74.05 76.53
TraesCS6B01G044500.1 Wheat plastid 70.8 76.49
TraesCS6B01G045700.1 Wheat plastid 73.86 76.48
GSMUA_Achr11P... Banana cytosol 70.23 76.35
TraesCS6D01G037200.1 Wheat golgi, plasma membrane, plastid 73.86 76.18
TraesCS6D01G038200.1 Wheat plasma membrane 73.86 76.18
TraesCS6D01G038300.1 Wheat plasma membrane 73.86 76.18
TraesCS6A01G033000.1 Wheat plasma membrane 73.86 76.03
TraesCS6B01G046600.1 Wheat plasma membrane 73.86 76.03
TraesCS6A01G033100.1 Wheat plasma membrane 73.66 75.98
TraesCS6B01G045600.1 Wheat golgi, plasma membrane, vacuole 73.66 75.98
TraesCS6D01G037900.1 Wheat plasma membrane 73.66 75.83
TraesCS6A01G033200.1 Wheat plasma membrane 73.47 75.79
TraesCS6B01G046700.1 Wheat plasma membrane 73.47 75.79
KRH22855 Soybean peroxisome 76.53 75.66
KRH26509 Soybean peroxisome 76.53 75.66
TraesCS6A01G032900.1 Wheat golgi, plasma membrane, vacuole 73.47 75.64
HORVU6Hr1G005930.1 Barley plasma membrane 73.28 75.59
TraesCS6B01G044400.1 Wheat plastid 81.49 75.58
KRH30604 Soybean peroxisome 76.34 75.47
CDY06298 Canola golgi, peroxisome, plasma membrane 60.5 75.3
HORVU6Hr1G005770.1 Barley plasma membrane 73.09 75.25
TraesCS6D01G038100.1 Wheat golgi, plasma membrane, vacuole 72.71 74.85
TraesCS6D01G038000.1 Wheat plasma membrane 72.33 74.75
TraesCS2A01G074800.1 Wheat plasma membrane 71.18 74.3
HORVU6Hr1G005750.1 Barley cytosol, plastid 14.31 74.26
TraesCS2D01G073500.1 Wheat plasma membrane 70.42 73.95
VIT_08s0040g01500.t01 Wine grape golgi, peroxisome, plasma membrane, plastid 73.86 72.88
VIT_06s0061g00320.t01 Wine grape peroxisome 73.66 72.83
PGSC0003DMT400050658 Potato plasma membrane 60.31 72.81
CDY32821 Canola cytosol, peroxisome, plasma membrane 64.12 72.41
CDX93591 Canola golgi, peroxisome, plasma membrane 63.93 72.2
CDY22704 Canola cytosol, peroxisome, plasma membrane 63.55 71.92
Bra030713.1-P Field mustard golgi, peroxisome, plasma membrane 72.71 71.89
CDX93592 Canola golgi, peroxisome, plasma membrane 62.98 71.74
PGSC0003DMT400092589 Potato plasma membrane 73.09 71.72
PGSC0003DMT400002924 Potato plasma membrane 72.52 71.7
Bra018656.1-P Field mustard golgi, peroxisome, plasma membrane 66.6 71.66
Bra031610.1-P Field mustard golgi, peroxisome, plasma membrane 72.33 71.64
AT5G60770.1 Thale cress plasma membrane 71.76 71.35
PGSC0003DMT400031304 Potato plasma membrane 72.14 71.32
AT1G08090.1 Thale cress cytosol, peroxisome, plasma membrane 71.95 71.13
Bra018655.1-P Field mustard golgi, peroxisome, plasma membrane 67.75 70.86
Bra002453.1-P Field mustard golgi, peroxisome, plasma membrane, plastid 71.18 70.78
CDY22703 Canola golgi, peroxisome, plasma membrane 66.98 69.92
KRH25078 Soybean peroxisome, plasma membrane, plastid, vacuole 59.35 69.73
Bra031611.1-P Field mustard golgi, peroxisome, plasma membrane 67.18 69.57
CDY06299 Canola golgi, peroxisome, plasma membrane 67.18 69.57
PGSC0003DMT400031306 Potato plasma membrane 46.76 69.41
CDY68730 Canola endoplasmic reticulum, plasma membrane 51.34 68.45
CDY70994 Canola golgi, plasma membrane 45.99 68.27
Bra034142.1-P Field mustard plasma membrane 20.04 68.18
CDY72274 Canola plasma membrane 45.8 67.99
AT1G08100.1 Thale cress cytosol, peroxisome, plasma membrane 67.37 67.62
PGSC0003DMT400050654 Potato plasma membrane 67.37 67.24
VIT_06s0061g00310.t01 Wine grape plasma membrane 31.87 67.07
Solyc11g069750.1.1 Tomato extracellular 66.98 66.86
Solyc11g069760.1.1 Tomato extracellular, plasma membrane 23.28 66.67
Solyc06g010250.2.1 Tomato plasma membrane 62.98 66.27
AT5G60780.1 Thale cress peroxisome 66.98 65.12
Solyc06g074990.1.1 Tomato plasma membrane 65.27 65.02
Bra037625.1-P Field mustard peroxisome 66.98 64.88
Bra038302.1-P Field mustard peroxisome 66.6 64.87
AT3G45060.1 Thale cress peroxisome 66.98 64.76
PGSC0003DMT400040689 Potato plasma membrane 64.69 64.69
Bra002451.1-P Field mustard golgi, peroxisome, plasma membrane 66.03 64.55
CDY50324 Canola plasma membrane 58.78 64.17
Bra037626.1-P Field mustard peroxisome 66.79 64.1
CDY69111 Canola peroxisome 58.59 63.96
Bra020230.1-P Field mustard peroxisome 59.35 63.73
Bra038301.1-P Field mustard golgi, peroxisome, plasma membrane 65.08 62.8
CDY31024 Canola endoplasmic reticulum, plasma membrane 18.13 61.69
CDY26984 Canola plasma membrane 53.44 61.4
CDY53125 Canola plastid 19.08 54.35
Zm00001d011679_P001 Maize plasma membrane 53.44 53.85
CDY31023 Canola endoplasmic reticulum, extracellular 7.82 48.81
AT4G14358.1 Thale cress cytosol 7.44 44.83
CDX99169 Canola cytosol 6.3 44.0
Solyc11g069740.1.1 Tomato cytosol, peroxisome 41.22 41.78
Zm00001d044504_P001 Maize plasma membrane 36.07 38.97
Zm00001d025783_P001 Maize extracellular, mitochondrion, plasma membrane, plastid, vacuole 13.17 35.75
Zm00001d016468_P001 Maize plasma membrane 13.93 34.11
Protein Annotations
Gene3D:1.20.1250.20MapMan:24.2.2.10MapMan:25.1.3.1EntrezGene:542092ProteinID:AQK61154.1EMBL:AY559405
GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0016020GO:GO:0016021GO:GO:0055085
InterPro:IPR020846InterPro:MFSInterPro:MFS_domInterPro:MFS_trans_sfPFAM:PF07690PANTHER:PTHR23515
PANTHER:PTHR23515:SF3UniProt:Q53CL7SUPFAM:SSF103473TMHMM:TMhelixUniParc:UPI000050B714EnsemblPlantsGene:Zm00001d054057
EnsemblPlants:Zm00001d054057_P001EnsemblPlants:Zm00001d054057_T001SEG:seg:::
Description
nitrate transport2
Coordinates
chr4:+:245638263..245639837
Molecular Weight (calculated)
56677.9 Da
IEP (calculated)
8.007
GRAVY (calculated)
0.369
Length
524 amino acids
Sequence
(BLAST)
001: MAAVGAPGSS LHGVTGREPA FAFSTEHEEA ASNGGKFDLP VDSEHKAKSV RLFSVANPHM RTFHLSWISF FTCFVSTFAA APLVPIIRDN LNLTKADIGN
101: AGVASVSGSI FSRLTMGAVC DLLGPRYGCA FLIMLSAPTV FCMSLIDDAA GYITVRFLIG FSLATFVSCQ YWMSTMFSSK IIGTVNGLAA GWGNMGGGAT
201: QLIMPLVYDV IRKCGATPFT AWRLAYFVPG LMHVVMGVLV LTLGQDLPDG NLRSLQKKGN VNKDSFSKVM WYAVINYRTW IFVLLYGYCM GVELTTDNVI
301: AEYMYDRFDL DLRVAGTIAA CFGMANIVAR PMGGIMSDMG ARYWGMRARL WNIWILQTAG GAFCLWLGRA STLPVSVVAM VLFSFCAQAA CGAIFGVIPF
401: VSRRSLGIIS GMTGAGGNFG AGLTQLLFFT SSTYSTGRGL EYMGIMIMAC TLPVVFVHFP QWGSMFFPPS ATADEEGYYA SEWNDDEKSK GLHSASLKFA
501: ENSRSERGKR NVIQADAAAT PEHV
Best Arabidopsis Sequence Match ( AT5G60770.1 )
(BLAST)
001: MADGFGEPGS SMHGVTGREQ SYAFSVESPA VPSDSSAKFS LPVDTEHKAK VFKLLSFEAP HMRTFHLAWI SFFTCFISTF AAAPLVPIIR DNLNLTRQDV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVGG AGGYITVRFM IGFCLATFVS CQYWMSTMFN GQIIGLVNGT AAGWGNMGGG
201: VTQLLMPMVY EIIRRLGSTS FTAWRMAFFV PGWMHIIMGI LVLTLGQDLP DGNRSTLEKK GAVTKDKFSK VLWYAITNYR TWVFVLLYGY SMGVELTTDN
301: VIAEYFFDRF HLKLHTAGII AASFGMANFF ARPIGGWASD IAARRFGMRG RLWTLWIIQT LGGFFCLWLG RATTLPTAVV FMILFSLGAQ AACGATFAII
401: PFISRRSLGI ISGLTGAGGN FGSGLTQLVF FSTSTFSTEQ GLTWMGVMIM ACTLPVTLVH FPQWGSMFLP STEDEVKSTE EYYYMKEWTE TEKRKGMHEG
501: SLKFAVNSRS ERGRRVASAP SPPPEHV
Arabidopsis Description
NRT2.4High affinity nitrate transporter 2.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH8]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.