Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G031000.1 | Wheat | plasma membrane | 99.21 | 99.21 |
| TraesCS6D01G035800.1 | Wheat | plasma membrane | 99.01 | 99.01 |
| TraesCS6B01G044200.1 | Wheat | plasma membrane | 98.82 | 98.82 |
| TraesCS6D01G035900.1 | Wheat | plasma membrane | 98.42 | 98.42 |
| TraesCS6D01G035600.1 | Wheat | plasma membrane | 91.32 | 90.96 |
| TraesCS6D01G037900.1 | Wheat | plasma membrane | 82.45 | 82.12 |
| TraesCS6D01G037800.1 | Wheat | plasma membrane | 81.66 | 81.66 |
| TraesCS6D01G038300.1 | Wheat | plasma membrane | 81.66 | 81.5 |
| TraesCS6D01G038200.1 | Wheat | plasma membrane | 81.46 | 81.3 |
| Zm00001d054060_P001 | Maize | plastid | 83.63 | 80.92 |
| EES04351 | Sorghum | golgi, peroxisome, plasma membrane | 84.02 | 80.83 |
| EES06135 | Sorghum | golgi, peroxisome, plasma membrane | 84.02 | 80.83 |
| TraesCS6D01G038100.1 | Wheat | golgi, plasma membrane, vacuole | 81.07 | 80.75 |
| Zm00001d054057_P001 | Maize | extracellular | 83.43 | 80.73 |
| TraesCS6D01G037300.1 | Wheat | golgi, plasma membrane, plastid | 80.67 | 80.51 |
| TraesCS6D01G037200.1 | Wheat | golgi, plasma membrane, plastid | 80.47 | 80.31 |
| Os02t0112600-01 | Rice | golgi, plasma membrane, plastid | 83.83 | 79.74 |
| Os02t0112100-01 | Rice | golgi, plasma membrane, plastid | 83.83 | 79.74 |
| TraesCS6D01G038000.1 | Wheat | plasma membrane | 79.68 | 79.68 |
| TraesCS2D01G073500.1 | Wheat | plasma membrane | 74.95 | 76.15 |
| Zm00001d014976_P001 | Maize | plasma membrane | 77.91 | 75.67 |
| EES04350 | Sorghum | plastid | 77.91 | 73.83 |
| KRH22855 | Soybean | peroxisome | 76.92 | 73.58 |
| KRH26509 | Soybean | peroxisome | 76.73 | 73.4 |
| GSMUA_Achr8P14230_001 | Banana | golgi, peroxisome, plasma membrane | 72.19 | 72.91 |
| KRH30604 | Soybean | peroxisome | 76.13 | 72.83 |
| PGSC0003DMT400050658 | Potato | plasma membrane | 61.74 | 72.12 |
| GSMUA_Achr11P... | Banana | cytosol | 68.24 | 71.78 |
| VIT_08s0040g01500.t01 | Wine grape | golgi, peroxisome, plasma membrane, plastid | 74.36 | 71.0 |
| VIT_06s0061g00320.t01 | Wine grape | peroxisome | 74.16 | 70.94 |
| CDY06298 | Canola | golgi, peroxisome, plasma membrane | 58.78 | 70.78 |
| VIT_06s0061g00310.t01 | Wine grape | plasma membrane | 34.32 | 69.88 |
| PGSC0003DMT400092589 | Potato | plasma membrane | 73.37 | 69.66 |
| AT1G08090.1 | Thale cress | cytosol, peroxisome, plasma membrane | 72.19 | 69.06 |
| CDY32821 | Canola | cytosol, peroxisome, plasma membrane | 63.12 | 68.97 |
| CDX93591 | Canola | golgi, peroxisome, plasma membrane | 63.12 | 68.97 |
| CDY22704 | Canola | cytosol, peroxisome, plasma membrane | 62.92 | 68.9 |
| Bra030713.1-P | Field mustard | golgi, peroxisome, plasma membrane | 71.79 | 68.68 |
| PGSC0003DMT400031306 | Potato | plasma membrane | 47.73 | 68.56 |
| CDX93592 | Canola | golgi, peroxisome, plasma membrane | 62.13 | 68.48 |
| Bra018656.1-P | Field mustard | golgi, peroxisome, plasma membrane | 65.68 | 68.38 |
| AT5G60770.1 | Thale cress | plasma membrane | 71.01 | 68.31 |
| PGSC0003DMT400002924 | Potato | plasma membrane | 71.4 | 68.3 |
| Bra031610.1-P | Field mustard | golgi, peroxisome, plasma membrane | 71.2 | 68.24 |
| Bra034142.1-P | Field mustard | plasma membrane | 20.71 | 68.18 |
| CDY72274 | Canola | plasma membrane | 47.34 | 67.99 |
| CDY70994 | Canola | golgi, plasma membrane | 47.34 | 67.99 |
| CDY22703 | Canola | golgi, peroxisome, plasma membrane | 67.26 | 67.93 |
| Solyc06g010250.2.1 | Tomato | plasma membrane | 66.67 | 67.87 |
| Bra018655.1-P | Field mustard | golgi, peroxisome, plasma membrane | 67.06 | 67.86 |
| PGSC0003DMT400050654 | Potato | plasma membrane | 70.22 | 67.81 |
| CDY06299 | Canola | golgi, peroxisome, plasma membrane | 67.65 | 67.79 |
| Bra031611.1-P | Field mustard | golgi, peroxisome, plasma membrane | 67.65 | 67.79 |
| PGSC0003DMT400031304 | Potato | plasma membrane | 70.81 | 67.74 |
| KRH25078 | Soybean | peroxisome, plasma membrane, plastid, vacuole | 59.57 | 67.71 |
| Bra002453.1-P | Field mustard | golgi, peroxisome, plasma membrane, plastid | 70.22 | 67.55 |
| CDY68730 | Canola | endoplasmic reticulum, plasma membrane | 52.27 | 67.43 |
| Solyc11g069750.1.1 | Tomato | extracellular | 69.82 | 67.43 |
| Solyc11g069760.1.1 | Tomato | extracellular, plasma membrane | 24.26 | 67.21 |
| AT1G08100.1 | Thale cress | cytosol, peroxisome, plasma membrane | 68.05 | 66.09 |
| AT5G60780.1 | Thale cress | peroxisome | 68.84 | 64.75 |
| PGSC0003DMT400040689 | Potato | plasma membrane | 66.47 | 64.31 |
| Bra038302.1-P | Field mustard | peroxisome | 68.05 | 64.13 |
| Bra002451.1-P | Field mustard | golgi, peroxisome, plasma membrane | 67.65 | 63.99 |
| AT3G45060.1 | Thale cress | peroxisome | 68.24 | 63.84 |
| Bra037625.1-P | Field mustard | peroxisome | 67.85 | 63.59 |
| CDY50324 | Canola | plasma membrane | 60.16 | 63.54 |
| CDY69111 | Canola | peroxisome | 59.96 | 63.33 |
| Solyc06g074990.1.1 | Tomato | plasma membrane | 65.68 | 63.31 |
| Bra020230.1-P | Field mustard | peroxisome | 60.35 | 62.7 |
| Bra037626.1-P | Field mustard | peroxisome | 67.26 | 62.45 |
| CDY31024 | Canola | endoplasmic reticulum, plasma membrane | 18.74 | 61.69 |
| Bra038301.1-P | Field mustard | golgi, peroxisome, plasma membrane | 65.29 | 60.96 |
| CDY26984 | Canola | plasma membrane | 54.04 | 60.09 |
| CDY53125 | Canola | plastid | 20.32 | 55.98 |
| TraesCS3D01G254900.1 | Wheat | plasma membrane | 55.82 | 55.06 |
| TraesCS1D01G035700.1 | Wheat | plasma membrane | 54.04 | 52.9 |
| CDY31023 | Canola | endoplasmic reticulum, extracellular | 8.48 | 51.19 |
| CDX99169 | Canola | cytosol | 7.3 | 49.33 |
| AT4G14358.1 | Thale cress | cytosol | 7.3 | 42.53 |
| Solyc11g069740.1.1 | Tomato | cytosol, peroxisome | 40.04 | 39.27 |
| TraesCS7D01G420900.1 | Wheat | golgi, peroxisome, plasma membrane | 36.88 | 38.72 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G035700.1 | EnsemblPlantsGene:TraesCS6D01G035700 | Gene3D:1.20.1250.20 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR020846 | InterPro:MFS | InterPro:MFS_dom |
| InterPro:MFS_trans_sf | PANTHER:PTHR23515 | PANTHER:PTHR23515:SF3 | PFAM:PF07690 | SEG:seg | SUPFAM:SSF103473 |
| TIGR:cd06174 | TMHMM:TMhelix | MapMan:24.2.2.10 | MapMan:25.1.3.1 | : | : |
Description
No Description!
Coordinates
chr6D:-:14631462..14632985
Molecular Weight (calculated)
54735.6 Da
IEP (calculated)
8.159
GRAVY (calculated)
0.378
Length
507 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVEAGAHGD TAASKFTLPV DSEHKAKSFR LFSFANPHMR TFHLSWISFF TCFVSTFAAA PLVPIIRDNL NLAKADIGNA GVASVSGSIF SRLAMGAVCD
101: LLGPRYGCAF LVMLSAPTVF CMAVIDDASG YIAVRFLIGF SLATFVSCQY WMSTMFNSKI IGTVNGLAAG WGNMGGGATQ LIMPLVFHAI QKCGATPFVA
201: WRIAYFVPGM MHIVMGLLVL TMGQDLPDGN LASLQKKGDM AKDKFSKVLW GAVTNYRTWI FVLLYGYCMG VELTTDNVIA EYYYDHFHLD LRAAGTIAAC
301: FGMANIVARP MGGYLSDLGA RYFGMRARLW NIWILQTAGG AFCIWLGRAS ALPASVTAMV LFSICAQAAC GAVFGVAPFV SRRSLGIISG LTGAGGNVGA
401: GLTQLLFFTS SQYSTGRGLE YMGIMIMACT LPVALVHFPQ WGSMFFPASA DATEEEYYGS EWSEEEKRNG LHIAGQKFAE NSRSERGRRN VILATSATPP
501: NNTPQHV
101: LLGPRYGCAF LVMLSAPTVF CMAVIDDASG YIAVRFLIGF SLATFVSCQY WMSTMFNSKI IGTVNGLAAG WGNMGGGATQ LIMPLVFHAI QKCGATPFVA
201: WRIAYFVPGM MHIVMGLLVL TMGQDLPDGN LASLQKKGDM AKDKFSKVLW GAVTNYRTWI FVLLYGYCMG VELTTDNVIA EYYYDHFHLD LRAAGTIAAC
301: FGMANIVARP MGGYLSDLGA RYFGMRARLW NIWILQTAGG AFCIWLGRAS ALPASVTAMV LFSICAQAAC GAVFGVAPFV SRRSLGIISG LTGAGGNVGA
401: GLTQLLFFTS SQYSTGRGLE YMGIMIMACT LPVALVHFPQ WGSMFFPASA DATEEEYYGS EWSEEEKRNG LHIAGQKFAE NSRSERGRRN VILATSATPP
501: NNTPQHV
001: MADGFGEPGS SMHGVTGREQ SYAFSVESPA VPSDSSAKFS LPVDTEHKAK VFKLLSFEAP HMRTFHLAWI SFFTCFISTF AAAPLVPIIR DNLNLTRQDV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVGG AGGYITVRFM IGFCLATFVS CQYWMSTMFN GQIIGLVNGT AAGWGNMGGG
201: VTQLLMPMVY EIIRRLGSTS FTAWRMAFFV PGWMHIIMGI LVLTLGQDLP DGNRSTLEKK GAVTKDKFSK VLWYAITNYR TWVFVLLYGY SMGVELTTDN
301: VIAEYFFDRF HLKLHTAGII AASFGMANFF ARPIGGWASD IAARRFGMRG RLWTLWIIQT LGGFFCLWLG RATTLPTAVV FMILFSLGAQ AACGATFAII
401: PFISRRSLGI ISGLTGAGGN FGSGLTQLVF FSTSTFSTEQ GLTWMGVMIM ACTLPVTLVH FPQWGSMFLP STEDEVKSTE EYYYMKEWTE TEKRKGMHEG
501: SLKFAVNSRS ERGRRVASAP SPPPEHV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVGG AGGYITVRFM IGFCLATFVS CQYWMSTMFN GQIIGLVNGT AAGWGNMGGG
201: VTQLLMPMVY EIIRRLGSTS FTAWRMAFFV PGWMHIIMGI LVLTLGQDLP DGNRSTLEKK GAVTKDKFSK VLWYAITNYR TWVFVLLYGY SMGVELTTDN
301: VIAEYFFDRF HLKLHTAGII AASFGMANFF ARPIGGWASD IAARRFGMRG RLWTLWIIQT LGGFFCLWLG RATTLPTAVV FMILFSLGAQ AACGATFAII
401: PFISRRSLGI ISGLTGAGGN FGSGLTQLVF FSTSTFSTEQ GLTWMGVMIM ACTLPVTLVH FPQWGSMFLP STEDEVKSTE EYYYMKEWTE TEKRKGMHEG
501: SLKFAVNSRS ERGRRVASAP SPPPEHV
Arabidopsis Description
NRT2.4High affinity nitrate transporter 2.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH8]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.