Factsheet for VIT_06s0061g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
plastid 2
peroxisome 2
plasma membrane 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_17s0000g09470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08090.1	VIT_17s0000g09470.t01	AT5G50200.1	17012411
AT5G60780.1	VIT_17s0000g09470.t01	AT5G50200.1	17012411

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0061g00310.t01	Wine grape	plasma membrane	45.66	97.19
KRH22855	Soybean	peroxisome	88.49	88.49
KRH26509	Soybean	peroxisome	87.92	87.92
KRH30604	Soybean	peroxisome	87.74	87.74
VIT_08s0040g01500.t01	Wine grape	golgi, peroxisome, plasma membrane, plastid	85.09	84.93
CDX93591	Canola	golgi, peroxisome, plasma membrane	71.89	82.11
CDY06298	Canola	golgi, peroxisome, plasma membrane	65.09	81.95
CDY32821	Canola	cytosol, peroxisome, plasma membrane	71.7	81.9
AT5G60770.1	Thale cress	plasma membrane	81.32	81.78
Bra030713.1-P	Field mustard	golgi, peroxisome, plasma membrane	81.32	81.32
CDX93592	Canola	golgi, peroxisome, plasma membrane	70.57	81.3
Bra018656.1-P	Field mustard	golgi, peroxisome, plasma membrane	74.53	81.11
CDY22704	Canola	cytosol, peroxisome, plasma membrane	70.75	80.99
Bra018655.1-P	Field mustard	golgi, peroxisome, plasma membrane	76.42	80.84
Bra002453.1-P	Field mustard	golgi, peroxisome, plasma membrane, plastid	80.38	80.83
Bra031610.1-P	Field mustard	golgi, peroxisome, plasma membrane	80.57	80.72
AT1G08090.1	Thale cress	cytosol, peroxisome, plasma membrane	80.57	80.57
GSMUA_Achr8P14230_001	Banana	golgi, peroxisome, plasma membrane	75.66	79.88
GSMUA_Achr11P...	Banana	cytosol	71.13	78.22
CDY72274	Canola	plasma membrane	52.08	78.19
KRH25078	Soybean	peroxisome, plasma membrane, plastid, vacuole	65.66	78.03
CDY70994	Canola	golgi, plasma membrane	51.51	77.34
CDY22703	Canola	golgi, peroxisome, plasma membrane	72.83	76.89
CDY06299	Canola	golgi, peroxisome, plasma membrane	73.4	76.88
CDY68730	Canola	endoplasmic reticulum, plasma membrane	56.98	76.84
Bra031611.1-P	Field mustard	golgi, peroxisome, plasma membrane	73.21	76.68
AT1G08100.1	Thale cress	cytosol, peroxisome, plasma membrane	74.34	75.48
Bra034142.1-P	Field mustard	plasma membrane	21.89	75.32
HORVU6Hr1G005750.1	Barley	cytosol, plastid	14.34	75.25
Os02t0112100-01	Rice	golgi, plasma membrane, plastid	75.47	75.05
Os02t0112600-01	Rice	golgi, plasma membrane, plastid	75.47	75.05
TraesCS6A01G030900.1	Wheat	plasma membrane	71.7	74.95
TraesCS6A01G031000.1	Wheat	plasma membrane	71.32	74.56
TraesCS6B01G044200.1	Wheat	plasma membrane	71.32	74.56
TraesCS6D01G035900.1	Wheat	plasma membrane	71.32	74.56
TraesCS6A01G030700.1	Wheat	plastid	71.13	74.36
TraesCS6B01G044300.1	Wheat	plasma membrane	71.13	74.36
TraesCS6A01G031100.1	Wheat	plastid	70.94	74.16
TraesCS6B01G044100.1	Wheat	plastid	70.94	74.16
TraesCS6D01G035700.1	Wheat	plasma membrane	70.94	74.16
HORVU6Hr1G005590.1	Barley	plasma membrane	70.75	73.96
TraesCS6A01G030800.1	Wheat	plasma membrane	70.75	73.96
TraesCS6D01G035800.1	Wheat	plasma membrane	70.75	73.96
Zm00001d054060_P001	Maize	plastid	73.02	73.86
Zm00001d054057_P001	Maize	extracellular	72.83	73.66
AT5G60780.1	Thale cress	peroxisome	74.91	73.65
Solyc06g010250.2.1	Tomato	plasma membrane	69.06	73.49
EES04351	Sorghum	golgi, peroxisome, plasma membrane	73.02	73.43
EES06135	Sorghum	golgi, peroxisome, plasma membrane	73.02	73.43
Bra037625.1-P	Field mustard	peroxisome	74.72	73.2
TraesCS6A01G031200.1	Wheat	plasma membrane	70.19	73.08
TraesCS6D01G035600.1	Wheat	plasma membrane	70.19	73.08
Bra038302.1-P	Field mustard	peroxisome	74.15	73.05
Bra020230.1-P	Field mustard	peroxisome	67.17	72.95
AT3G45060.1	Thale cress	peroxisome	74.53	72.88
Bra037626.1-P	Field mustard	peroxisome	74.91	72.71
TraesCS6B01G044000.1	Wheat	plasma membrane	69.81	72.69
PGSC0003DMT400050654	Potato	plasma membrane	71.89	72.57
Solyc11g069750.1.1	Tomato	extracellular	71.7	72.38
PGSC0003DMT400040689	Potato	plasma membrane	71.51	72.33
Bra002451.1-P	Field mustard	golgi, peroxisome, plasma membrane	72.64	71.83
CDY69111	Canola	peroxisome	64.91	71.67
CDY50324	Canola	plasma membrane	64.72	71.46
Bra038301.1-P	Field mustard	golgi, peroxisome, plasma membrane	73.21	71.45
HORVU6Hr1G005570.1	Barley	golgi, plasma membrane	36.6	71.32
HORVU6Hr1G005600.2	Barley	endoplasmic reticulum	67.55	70.33
CDY26984	Canola	plasma membrane	59.43	69.08
HORVU6Hr1G005580.1	Barley	plastid	70.94	68.99
TraesCS6D01G037200.1	Wheat	golgi, plasma membrane, plastid	66.04	68.9
TraesCS6A01G032400.1	Wheat	plastid	65.85	68.7
TraesCS6D01G037300.1	Wheat	golgi, plasma membrane, plastid	65.85	68.7
TraesCS6D01G038100.1	Wheat	golgi, plasma membrane, vacuole	65.85	68.57
TraesCS6A01G032500.1	Wheat	plastid	65.66	68.5
TraesCS6B01G045600.1	Wheat	golgi, plasma membrane, vacuole	65.66	68.5
TraesCS6B01G045700.1	Wheat	plastid	65.28	68.38
TraesCS6A01G033000.1	Wheat	plasma membrane	65.66	68.37
TraesCS6B01G046600.1	Wheat	plasma membrane	65.66	68.37
HORVU6Hr1G005780.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	59.43	68.33
TraesCS6D01G037900.1	Wheat	plasma membrane	65.47	68.17
EES04350	Sorghum	plastid	68.49	67.85
HORVU6Hr1G005930.1	Barley	plasma membrane	64.91	67.72
TraesCS6B01G046500.1	Wheat	plasma membrane	64.72	67.65
TraesCS6D01G037800.1	Wheat	plasma membrane	64.72	67.65
Zm00001d014976_P001	Maize	plasma membrane	66.6	67.62
TraesCS6A01G032900.1	Wheat	golgi, plasma membrane, vacuole	64.91	67.58
TraesCS6A01G032800.1	Wheat	plasma membrane	64.53	67.46
HORVU6Hr1G005770.1	Barley	plasma membrane	64.72	67.39
TraesCS6B01G046700.1	Wheat	plasma membrane	64.53	67.32
TraesCS6D01G038200.1	Wheat	plasma membrane	64.34	67.13
TraesCS6A01G033100.1	Wheat	plasma membrane	64.15	66.93
TraesCS6B01G044400.1	Wheat	plastid	71.32	66.9
CDY31024	Canola	endoplasmic reticulum, plasma membrane	19.43	66.88
TraesCS6D01G038000.1	Wheat	plasma membrane	63.96	66.86
TraesCS6B01G044500.1	Wheat	plastid	61.13	66.8
TraesCS6A01G033200.1	Wheat	plasma membrane	63.96	66.73
TraesCS6D01G038300.1	Wheat	plasma membrane	63.77	66.54
TraesCS2A01G074800.1	Wheat	plasma membrane	63.02	66.53
TraesCS2D01G073500.1	Wheat	plasma membrane	62.45	66.33
HORVU6Hr1G005720.1	Barley	extracellular	47.36	66.23
CDY53125	Canola	plastid	22.08	63.59
VIT_01s0127g00070.t01	Wine grape	plasma membrane	58.3	61.19
CDY31023	Canola	endoplasmic reticulum, extracellular	8.68	54.76
VIT_14s0066g00850.t01	Wine grape	plasma membrane	46.98	54.73
CDX99169	Canola	cytosol	7.74	54.67
AT4G14358.1	Thale cress	cytosol	6.79	41.38

Protein Annotations

Gene3D:1.20.1250.20	EntrezGene:100241340	wikigene:100241340	MapMan:24.2.2.10	MapMan:25.1.3.1	EMBL:AM464485
ProteinID:CAN77058	ProteinID:CAN77058.1	ProteinID:CCB44240	ProteinID:CCB44240.1	UniProt:F6GWA5	EMBL:FN594957
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0009705	GO:GO:0009987
GO:GO:0015112	GO:GO:0015706	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	GO:GO:0071249
InterPro:IPR020846	EntrezGene:LOC100241340	wikigene:LOC100241340	InterPro:MFS	InterPro:MFS_dom	InterPro:MFS_trans_sf
PFAM:PF07690	ScanProsite:PS00216	PFscan:PS50850	PANTHER:PTHR23515	PANTHER:PTHR23515:SF3	SUPFAM:SSF103473
InterPro:Sugar_transporter_CS	TMHMM:TMhelix	UniParc:UPI00015C9ED8	ArrayExpress:VIT_06s0061g00320	EnsemblPlantsGene:VIT_06s0061g00320	EnsemblPlants:VIT_06s0061g00320.t01
RefSeq:XP_002277127	RefSeq:XP_002277127.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6:+:17713513..17715380

Molecular Weight (calculated)

57354.8 Da

IEP (calculated)

9.184

GRAVY (calculated)

0.362

Length

530 amino acids

Sequence
(BLAST)

001: MSNIEGSPGS SMHGVTGREQ TFAFSVASPI VPTDTSANFA LPVDSEHKAK VFKILSFANP HMRTFHLSWI SFFTCFVSTF AAAPLVPIIR DNLNLTKGDV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFCMSFVSS AGGYIAVRFM IGFSLATFVS CQYWMSTMFN GKIIGLVNGT AAGWGNMGGG
201: ATQLIMPILY EVICRVGSTP FTAWRIAFFI PGWLHVIMGI LVLTLGQDLP DGNLSTLQKK GDVSRDKFSR VFWYAITNYR TWIFVLLYGY SMGVELSIDN
301: VIAEYFYDRF NLKLHTAGII AATFGMANLV ARPFGGYSSD LAGRRFGMRG RLWTLWILQT LGGVFCIWLG RANSLSIAVL AMMLFSVGAQ AACGATFGIV
401: PFISRRSLGI ISGLTGAGGN FGSGLTQLVF FSSSKFSTAT GLSLMGAMIV ACTLPVTLVH FPQWGSMFLP PSKDVVKGTE EHYYESEWNE EEKQKGMHQG
501: SLKFAENSRS ERGQRVASAP TPPNSTPSHV

Best Arabidopsis Sequence Match ( AT5G60770.1 )
(BLAST)

001: MADGFGEPGS SMHGVTGREQ SYAFSVESPA VPSDSSAKFS LPVDTEHKAK VFKLLSFEAP HMRTFHLAWI SFFTCFISTF AAAPLVPIIR DNLNLTRQDV
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVGG AGGYITVRFM IGFCLATFVS CQYWMSTMFN GQIIGLVNGT AAGWGNMGGG
201: VTQLLMPMVY EIIRRLGSTS FTAWRMAFFV PGWMHIIMGI LVLTLGQDLP DGNRSTLEKK GAVTKDKFSK VLWYAITNYR TWVFVLLYGY SMGVELTTDN
301: VIAEYFFDRF HLKLHTAGII AASFGMANFF ARPIGGWASD IAARRFGMRG RLWTLWIIQT LGGFFCLWLG RATTLPTAVV FMILFSLGAQ AACGATFAII
401: PFISRRSLGI ISGLTGAGGN FGSGLTQLVF FSTSTFSTEQ GLTWMGVMIM ACTLPVTLVH FPQWGSMFLP STEDEVKSTE EYYYMKEWTE TEKRKGMHEG
501: SLKFAVNSRS ERGRRVASAP SPPPEHV

Arabidopsis Description

NRT2.4High affinity nitrate transporter 2.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.