Factsheet for HORVU6Hr1G005600.2

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	endoplasmic reticulum, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU5Hr1G115500.4
HORVU6Hr1G053710.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08090.1	HORVU5Hr1G115500.4	AT5G50200.1	17012411
AT1G08090.1	HORVU6Hr1G053710.1	AT5G50200.1	17012411
AT5G60780.1	HORVU5Hr1G115500.4	AT5G50200.1	17012411
AT5G60780.1	HORVU6Hr1G053710.1	AT5G50200.1	17012411

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G044000.1	Wheat	plasma membrane	94.11	94.11
TraesCS6D01G035600.1	Wheat	plasma membrane	93.71	93.71
TraesCS6A01G031200.1	Wheat	plasma membrane	92.93	92.93
HORVU6Hr1G005570.1	Barley	golgi, plasma membrane	47.94	89.71
HORVU6Hr1G005590.1	Barley	plasma membrane	89.19	89.55
HORVU6Hr1G005580.1	Barley	plastid	89.0	83.12
HORVU6Hr1G005780.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	75.05	82.86
HORVU6Hr1G005720.1	Barley	extracellular	59.73	80.21
HORVU6Hr1G005930.1	Barley	plasma membrane	78.98	79.13
HORVU6Hr1G005770.1	Barley	plasma membrane	78.39	78.39
Zm00001d054057_P001	Maize	extracellular	80.16	77.86
Zm00001d054060_P001	Maize	plastid	79.96	77.67
Os02t0112100-01	Rice	golgi, plasma membrane, plastid	80.94	77.3
Os02t0112600-01	Rice	golgi, plasma membrane, plastid	80.94	77.3
EES06135	Sorghum	golgi, peroxisome, plasma membrane	79.57	76.85
EES04351	Sorghum	golgi, peroxisome, plasma membrane	79.57	76.85
PGSC0003DMT400050658	Potato	plasma membrane	61.69	72.35
Zm00001d014976_P001	Maize	plasma membrane	73.08	71.26
KRH26509	Soybean	peroxisome	73.48	70.57
EES04350	Sorghum	plastid	74.07	70.47
KRH30604	Soybean	peroxisome	73.28	70.38
KRH22855	Soybean	peroxisome	73.08	70.19
GSMUA_Achr8P14230_001	Banana	golgi, peroxisome, plasma membrane	69.16	70.12
HORVU6Hr1G005750.1	Barley	cytosol, plastid	13.56	68.32
CDY70994	Canola	golgi, plasma membrane	47.35	68.27
GSMUA_Achr11P...	Banana	cytosol	64.44	68.05
CDY06298	Canola	golgi, peroxisome, plasma membrane	56.19	67.93
Solyc11g069760.1.1	Tomato	extracellular, plasma membrane	24.36	67.76
PGSC0003DMT400031306	Potato	plasma membrane	46.95	67.71
CDY72274	Canola	plasma membrane	46.95	67.71
VIT_08s0040g01500.t01	Wine grape	golgi, peroxisome, plasma membrane, plastid	70.53	67.61
VIT_06s0061g00320.t01	Wine grape	peroxisome	70.33	67.55
VIT_06s0061g00310.t01	Wine grape	plasma membrane	33.01	67.47
CDY32821	Canola	cytosol, peroxisome, plasma membrane	61.1	67.03
Bra034142.1-P	Field mustard	plasma membrane	20.24	66.88
PGSC0003DMT400092589	Potato	plasma membrane	70.14	66.85
CDY22704	Canola	cytosol, peroxisome, plasma membrane	60.71	66.74
CDY68730	Canola	endoplasmic reticulum, plasma membrane	51.47	66.67
Bra030713.1-P	Field mustard	golgi, peroxisome, plasma membrane	69.35	66.6
PGSC0003DMT400002924	Potato	plasma membrane	69.35	66.6
AT1G08090.1	Thale cress	cytosol, peroxisome, plasma membrane	69.16	66.42
CDX93591	Canola	golgi, peroxisome, plasma membrane	60.51	66.38
Bra031610.1-P	Field mustard	golgi, peroxisome, plasma membrane	68.96	66.35
CDY22703	Canola	golgi, peroxisome, plasma membrane	65.03	65.94
CDX93592	Canola	golgi, peroxisome, plasma membrane	59.53	65.87
Bra018656.1-P	Field mustard	golgi, peroxisome, plasma membrane	62.87	65.71
KRH25078	Soybean	peroxisome, plasma membrane, plastid, vacuole	57.56	65.7
Bra031611.1-P	Field mustard	golgi, peroxisome, plasma membrane	65.23	65.61
CDY06299	Canola	golgi, peroxisome, plasma membrane	65.23	65.61
Bra018655.1-P	Field mustard	golgi, peroxisome, plasma membrane	64.44	65.47
AT5G60770.1	Thale cress	plasma membrane	67.78	65.46
PGSC0003DMT400031304	Potato	plasma membrane	67.78	65.09
Bra002453.1-P	Field mustard	golgi, peroxisome, plasma membrane, plastid	67.39	65.09
Solyc06g010250.2.1	Tomato	plasma membrane	63.26	64.66
AT1G08100.1	Thale cress	cytosol, peroxisome, plasma membrane	65.62	63.98
PGSC0003DMT400050654	Potato	plasma membrane	65.62	63.62
Solyc11g069750.1.1	Tomato	extracellular	65.23	63.24
Solyc06g074990.1.1	Tomato	plasma membrane	64.24	62.17
CDY31024	Canola	endoplasmic reticulum, plasma membrane	18.66	61.69
AT5G60780.1	Thale cress	peroxisome	64.44	60.85
PGSC0003DMT400040689	Potato	plasma membrane	62.48	60.69
Bra037626.1-P	Field mustard	peroxisome	64.64	60.26
Bra038302.1-P	Field mustard	peroxisome	63.65	60.22
Bra002451.1-P	Field mustard	golgi, peroxisome, plasma membrane	63.26	60.07
AT3G45060.1	Thale cress	peroxisome	63.85	59.96
CDY69111	Canola	peroxisome	56.19	59.58
Bra037625.1-P	Field mustard	peroxisome	63.26	59.52
Bra038301.1-P	Field mustard	golgi, peroxisome, plasma membrane	63.26	59.3
CDY50324	Canola	plasma membrane	55.8	59.17
Bra020230.1-P	Field mustard	peroxisome	56.39	58.81
CDY26984	Canola	plasma membrane	52.46	58.55
CDY53125	Canola	plastid	20.43	56.52
CDY31023	Canola	endoplasmic reticulum, extracellular	8.45	51.19
HORVU3Hr1G066090.1	Barley	plasma membrane	51.67	51.17
CDX99169	Canola	cytosol	7.07	48.0
HORVU7Hr1G098550.3	Barley	plasma membrane	35.76	37.68
Solyc11g069740.1.1	Tomato	cytosol, peroxisome	38.11	37.52
AT4G14358.1	Thale cress	cytosol	5.89	34.48

Protein Annotations

Gene3D:1.20.1250.20	MapMan:24.2.2.10	MapMan:25.1.3.1	UniProt:A0A287T7W3	ncoils:Coil	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	EnsemblPlantsGene:HORVU6Hr1G005600
EnsemblPlants:HORVU6Hr1G005600.2	InterPro:IPR020846	InterPro:MFS	InterPro:MFS_dom	InterPro:MFS_trans_sf	PFAM:PF07690
PANTHER:PTHR23515	PANTHER:PTHR23515:SF3	SUPFAM:SSF103473	TMHMM:TMhelix	UniParc:UPI000B484711	SEG:seg

Description

No Description!

Coordinates

chrchr6H:-:12385842..12387748

Molecular Weight (calculated)

52788.7 Da

IEP (calculated)

8.756

GRAVY (calculated)

0.386

Length

509 amino acids

Sequence
(BLAST)

001: MEVXXXXXXX XXXXXXXXXX XXXXXHKAKS IRLFSFANPH MRTFHLSWIS FFTCFVSTFA AAPLVPIIRD NLNLAKADIG NAGVASVSGS IFSRLAMGAI
101: CDLLGPRYGC AFLVMLAAPT VFCMSLIDDA AGYITVRFLI GFSLATFVSC QYWMSTMFNS KIIGTVNGLA AGWGNMGGGA TQLIMPLVFH AIQKCGATPF
201: VAWRIAYFVP GMMHVVMGLL VLTMGQDLPD GNLASLQKKG EMAKDKFSKV VWGAVTNYRT WIFVLLYGYC MGVELTTDNV IAEYYFDHFH LDLRTSGTIA
301: ACFGMANIVA RPAGGYLSDL GARYFGMRAR LWNIWILQTA GGAFCLWLGR AKALPESITA MVLFSICAQA ACGAVFGVIP FVSRRSLGII SGLSGAGGNF
401: GAGLTQLLFF TSSKYGTGRG LEYMGIMIMA CTLPVALVHF PQWGSMLLPP NANATEEEFY AAEWSEEEKK KGLHIPGQKF AENSRSERGR HNVILATAAT
501: PPNNTPQHA

Best Arabidopsis Sequence Match ( AT1G08090.1 )
(BLAST)

001: MGDSTGEPGS SMHGVTGREQ SFAFSVQSPI VHTDKTAKFD LPVDTEHKAT VFKLFSFAKP HMRTFHLSWI SFSTCFVSTF AAAPLVPIIR ENLNLTKQDI
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
301: VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV
401: PFVSRRALGI ISGLTGAGGN FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE AHYYGSEWNE QEKQKNMHQG
501: SLRFAENAKS EGGRRVRSAA TPPENTPNNV

Arabidopsis Description

NRT2.1High-affinity nitrate transporter 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O82811]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.