Factsheet for HORVU5Hr1G115500.4

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU6Hr1G005570.1
HORVU6Hr1G005580.1
HORVU6Hr1G005590.1
HORVU6Hr1G005600.2
HORVU6Hr1G005720.1
HORVU6Hr1G005750.1
HORVU6Hr1G005770.1
HORVU6Hr1G005780.1
HORVU6Hr1G005930.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G50200.1	HORVU6Hr1G005570.1	AT1G08090.1	17012411
AT5G50200.1	HORVU6Hr1G005580.1	AT1G08090.1	17012411
AT5G50200.1	HORVU6Hr1G005590.1	AT1G08090.1	17012411
AT5G50200.1	HORVU6Hr1G005600.2	AT1G08090.1	17012411
AT5G50200.1	HORVU6Hr1G005720.1	AT1G08090.1	17012411
AT5G50200.1	HORVU6Hr1G005750.1	AT1G08090.1	17012411
AT5G50200.1	HORVU6Hr1G005770.1	AT1G08090.1	17012411
AT5G50200.1	HORVU6Hr1G005780.1	AT1G08090.1	17012411
AT5G50200.1	HORVU6Hr1G005930.1	AT1G08090.1	17012411
AT5G50200.1	HORVU6Hr1G005570.1	AT5G60780.1	17012411
AT5G50200.1	HORVU6Hr1G005580.1	AT5G60780.1	17012411
AT5G50200.1	HORVU6Hr1G005590.1	AT5G60780.1	17012411
AT5G50200.1	HORVU6Hr1G005600.2	AT5G60780.1	17012411
AT5G50200.1	HORVU6Hr1G005720.1	AT5G60780.1	17012411
AT5G50200.1	HORVU6Hr1G005750.1	AT5G60780.1	17012411
AT5G50200.1	HORVU6Hr1G005770.1	AT5G60780.1	17012411
AT5G50200.1	HORVU6Hr1G005780.1	AT5G60780.1	17012411
AT5G50200.1	HORVU6Hr1G005930.1	AT5G60780.1	17012411

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G506100.1	Wheat	endoplasmic reticulum, extracellular, vacuole	72.14	94.97
HORVU6Hr1G053710.1	Barley	extracellular	67.18	88.89
TraesCS4A01G367300.1	Wheat	plastid	75.95	78.04
Zm00001d017095_P001	Maize	extracellular	46.56	60.1
EES07094	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	48.09	59.72
Os02t0595900-01	Rice	plasma membrane	46.18	58.74
GSMUA_Achr6P12130_001	Banana	endoplasmic reticulum, extracellular	42.37	55.5
GSMUA_Achr9P01940_001	Banana	endoplasmic reticulum	40.46	53.54
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane	40.84	52.45
VIT_17s0000g09470.t01	Wine grape	endoplasmic reticulum, vacuole	38.55	50.25
KRH57152	Soybean	endoplasmic reticulum, extracellular	38.17	48.08
KRH03862	Soybean	endoplasmic reticulum, extracellular	37.79	47.6
Solyc03g112100.2.1	Tomato	endoplasmic reticulum, extracellular, plasma membrane	32.44	41.87
AT5G50200.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	31.68	39.52
CDY64637	Canola	endoplasmic reticulum, extracellular, plasma membrane	30.15	38.35
CDY34047	Canola	endoplasmic reticulum, extracellular, plasma membrane	30.15	38.35
Bra000613.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	30.15	38.35
Bra013828.1-P	Field mustard	cytosol	22.52	38.31
Bra033790.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	29.77	37.86
CDX83019	Canola	endoplasmic reticulum, extracellular, plasma membrane	29.77	37.86
CDX71613	Canola	endoplasmic reticulum, extracellular	30.15	37.26
Bra037934.1-P	Field mustard	endoplasmic reticulum, extracellular	29.39	37.02
CDX91545	Canola	endoplasmic reticulum, extracellular, plasma membrane	29.77	36.79
CDY03424	Canola	endoplasmic reticulum, extracellular, plasma membrane	29.01	36.54
Bra022511.1-P	Field mustard	extracellular	29.39	36.32
CDY16372	Canola	extracellular	29.39	36.32
CDY05799	Canola	cytosol, endoplasmic reticulum, plastid	14.89	34.51
AT4G24715.1	Thale cress	endoplasmic reticulum, extracellular, plasma membrane	28.24	32.03
CDY34305	Canola	extracellular, plasma membrane, plastid	29.77	29.77
Solyc03g112090.2.1	Tomato	extracellular	12.6	28.7
PGSC0003DMT400046695	Potato	endoplasmic reticulum, golgi, plasma membrane	33.97	26.89

Protein Annotations

EnsemblPlants:HORVU5Hr1G115500.4	EnsemblPlantsGene:HORVU5Hr1G115500	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0010167
GO:GO:0015706	GO:GO:0016020	GO:GO:0016021	InterPro:Transptr_NO3_Nar2	PANTHER:PTHR34806	PFAM:PF16974
SEG:seg	TMHMM:TMhelix	UniParc:UPI000B481400	UniProt:A0A287SUE6	MapMan:25.1.3.2	:

Description

No Description!

Coordinates

chrchr5H:-:646684947..646686087

Molecular Weight (calculated)

27931.4 Da

IEP (calculated)

9.938

GRAVY (calculated)

-0.002

Length

262 amino acids

Sequence
(BLAST)

001: PTRMAAPASA HGQRSRTNCL HYIYTLNPSV LLHRSLPAPS IKPSLTEQQL RARARPSSTT AMARSDLVMA LLVAVLAAGC CASAGAVAYL SKLPVTLDVT
101: ASPTPGQVLH AGEDVITVTW ALNATRPAGD DAAYKSVKVS LCYAPASQKE REWRKTHDDL KKDKTCQFKV TQQPYAAGGA GGRVEYRVAL DIPTAAYYVR
201: AYALDASGTQ VAYGQTAPAT AFDVVSITGV TTSIKVAAGV FSTFSVVSLA FFFFIEKRKK NN

Best Arabidopsis Sequence Match ( AT5G50200.1 )
(BLAST)

001: MAIQKILFAS LLICSLIQSI HGAEKVRLFK ELDKGALDVT TKPSREGPGV VLDAGKDTLN ITWTLSSIGS KREAEFKIIK VKLCYAPPSQ VDRPWRKTHD
101: ELFKDKTCPH KIIAKPYDKT LQSTTWTLER DIPTGTYFVR AYAVDAIGHE VAYGQSTDDA KKTNLFSVQA ISGRHASLDI ASICFSVFSV VALVVFFVNE
201: KRKAKIEQSK

Arabidopsis Description

NRT3.1High-affinity nitrate transporter 3.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGS5]
SUBAcon: [endoplasmic reticulum,extracellular,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.