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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 4
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:secretory
iPSORT:secretory
MultiLoc:extracellular
TargetP:secretory
YLoc:extracellular
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU5Hr1G115500.4
HORVU6Hr1G053710.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G08090.1 HORVU5Hr1G115500.4 AT5G50200.1 17012411
AT1G08090.1 HORVU6Hr1G053710.1 AT5G50200.1 17012411
AT5G60780.1 HORVU5Hr1G115500.4 AT5G50200.1 17012411
AT5G60780.1 HORVU6Hr1G053710.1 AT5G50200.1 17012411
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU6Hr1G005570.1 Barley golgi, plasma membrane 58.84 81.99
HORVU6Hr1G005780.1 Barley endoplasmic reticulum, plasma membrane, vacuole 90.5 74.4
TraesCS6D01G037300.1 Wheat golgi, plasma membrane, plastid 98.15 73.23
TraesCS6D01G037200.1 Wheat golgi, plasma membrane, plastid 97.89 73.03
TraesCS6A01G032400.1 Wheat plastid 97.89 73.03
TraesCS6B01G045700.1 Wheat plastid 97.1 72.73
TraesCS6B01G045600.1 Wheat golgi, plasma membrane, vacuole 97.36 72.64
TraesCS6A01G032500.1 Wheat plastid 97.36 72.64
HORVU6Hr1G005770.1 Barley plasma membrane 90.5 67.39
HORVU6Hr1G005930.1 Barley plasma membrane 89.45 66.73
Solyc11g069760.1.1 Tomato extracellular, plasma membrane 31.66 65.57
PGSC0003DMT400031306 Potato plasma membrane 59.89 64.31
CDY72274 Canola plasma membrane 59.1 63.46
CDY70994 Canola golgi, plasma membrane 58.84 63.17
VIT_06s0061g00310.t01 Wine grape plasma membrane 41.42 63.05
CDY31024 Canola endoplasmic reticulum, plasma membrane 25.59 62.99
CDY68730 Canola endoplasmic reticulum, plasma membrane 63.85 61.58
HORVU6Hr1G005590.1 Barley plasma membrane 81.79 61.14
HORVU6Hr1G005600.2 Barley endoplasmic reticulum 80.21 59.73
PGSC0003DMT400050658 Potato plasma membrane 67.02 58.53
Bra034142.1-P Field mustard plasma membrane 23.48 57.79
HORVU6Hr1G005580.1 Barley plastid 82.32 57.25
CDY31023 Canola endoplasmic reticulum, extracellular 12.4 55.95
Zm00001d054057_P001 Maize extracellular 77.04 55.73
Os02t0112600-01 Rice golgi, plasma membrane, plastid 78.36 55.72
Os02t0112100-01 Rice golgi, plasma membrane, plastid 78.36 55.72
Zm00001d054060_P001 Maize plastid 76.78 55.53
CDY53125 Canola plastid 26.65 54.89
EES06135 Sorghum golgi, peroxisome, plasma membrane 75.99 54.65
EES04351 Sorghum golgi, peroxisome, plasma membrane 75.99 54.65
CDX99169 Canola cytosol 10.55 53.33
Zm00001d014976_P001 Maize plasma membrane 73.09 53.07
CDY26984 Canola plasma membrane 63.59 52.85
EES04350 Sorghum plastid 73.35 51.96
GSMUA_Achr11P... Banana cytosol 64.12 50.41
KRH30604 Soybean peroxisome 69.13 49.43
KRH22855 Soybean peroxisome 68.87 49.25
KRH26509 Soybean peroxisome 68.87 49.25
Solyc06g010250.2.1 Tomato plasma membrane 63.85 48.59
VIT_08s0040g01500.t01 Wine grape golgi, peroxisome, plasma membrane, plastid 67.55 48.21
PGSC0003DMT400002924 Potato plasma membrane 67.02 47.92
PGSC0003DMT400050654 Potato plasma membrane 65.7 47.43
VIT_06s0061g00320.t01 Wine grape peroxisome 66.23 47.36
Solyc11g069750.1.1 Tomato extracellular 65.44 47.24
GSMUA_Achr8P14230_001 Banana golgi, peroxisome, plasma membrane 62.53 47.21
PGSC0003DMT400092589 Potato plasma membrane 66.23 47.0
PGSC0003DMT400031304 Potato plasma membrane 64.91 46.42
PGSC0003DMT400040689 Potato plasma membrane 64.12 46.37
AT5G60770.1 Thale cress plasma membrane 64.12 46.11
Bra031611.1-P Field mustard golgi, peroxisome, plasma membrane 61.48 46.05
CDY06299 Canola golgi, peroxisome, plasma membrane 61.48 46.05
AT1G08090.1 Thale cress cytosol, peroxisome, plasma membrane 64.12 45.85
Bra030713.1-P Field mustard golgi, peroxisome, plasma membrane 64.12 45.85
Bra002453.1-P Field mustard golgi, peroxisome, plasma membrane, plastid 63.59 45.73
Bra020230.1-P Field mustard peroxisome 58.84 45.7
AT5G60780.1 Thale cress peroxisome 64.91 45.64
CDY22703 Canola golgi, peroxisome, plasma membrane 60.42 45.62
Bra031610.1-P Field mustard golgi, peroxisome, plasma membrane 63.59 45.56
AT3G45060.1 Thale cress peroxisome 64.91 45.39
Bra038302.1-P Field mustard peroxisome 64.38 45.35
CDY69111 Canola peroxisome 56.73 44.79
Bra037625.1-P Field mustard peroxisome 63.85 44.73
CDY50324 Canola plasma membrane 56.46 44.58
Bra002451.1-P Field mustard golgi, peroxisome, plasma membrane 62.53 44.22
Bra037626.1-P Field mustard peroxisome 63.59 44.14
Bra018656.1-P Field mustard golgi, peroxisome, plasma membrane 56.2 43.74
Bra018655.1-P Field mustard golgi, peroxisome, plasma membrane 57.78 43.71
AT1G08100.1 Thale cress cytosol, peroxisome, plasma membrane 59.37 43.1
CDY22704 Canola cytosol, peroxisome, plasma membrane 52.51 42.98
CDY32821 Canola cytosol, peroxisome, plasma membrane 52.51 42.89
Solyc06g074990.1.1 Tomato plasma membrane 59.37 42.78
Bra038301.1-P Field mustard golgi, peroxisome, plasma membrane 61.21 42.73
CDX93591 Canola golgi, peroxisome, plasma membrane 52.24 42.67
KRH25078 Soybean peroxisome, plasma membrane, plastid, vacuole 50.13 42.6
CDX93592 Canola golgi, peroxisome, plasma membrane 51.45 42.39
CDY06298 Canola golgi, peroxisome, plasma membrane 46.17 41.57
HORVU3Hr1G066090.1 Barley plasma membrane 52.77 38.91
HORVU7Hr1G098550.3 Barley plasma membrane 37.73 29.61
Solyc11g069740.1.1 Tomato cytosol, peroxisome 32.72 23.98
AT4G14358.1 Thale cress cytosol 2.64 11.49
HORVU6Hr1G005750.1 Barley cytosol, plastid 0.0 0.0
Protein Annotations
EnsemblPlants:HORVU6Hr1G005720.1EnsemblPlantsGene:HORVU6Hr1G005720Gene3D:1.20.1250.20GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:MFS_trans_sfPANTHER:PTHR23515PANTHER:PTHR23515:SF3SEG:segSUPFAM:SSF103473TMHMM:TMhelix
UniParc:UPI000B4667A2UniProt:A0A287T7Q0MapMan:24.2.2.10MapMan:25.1.3.1::
Description
No Description!
Coordinates
chrchr6H:-:12654106..12655479
Molecular Weight (calculated)
41098.4 Da
IEP (calculated)
8.642
GRAVY (calculated)
0.387
Length
379 amino acids
Sequence
(BLAST)
001: AGYITIRFLI GVSLATFVSC QYWISTMFNS KIIGTVGGLT AGWGDMGGGA TQLIMPFVFD AIKACGATRF TAWRIAYFVP GMMLVVMGLL VLTLGQDLPD
101: GNLRSLQKNG DMNKDKFSKV LRGAVTNYRT WIFIFIYGYC MGVELTSNNV IAGYYYDSFY LDLRKAGIIA ACFGLANIFA RPMGGYLSDL GARYFGMRAR
201: LWNIWILQTA GGVFCFCLGR ASTLPTSIAC MVLYSICVEA ACGAVYGVIP FVSRRSLGLV SGMTGAGGNV GGGLTQLLFF TSSQYTTGKG LQYMGIMIMA
301: CTLPVVLVHF PQWGSMFVPP SADATEEEYY AAEWTEEEKG KGLHMAGLKF AENSISERGR RNAILAVPAT PPNSTPQHV
Best Arabidopsis Sequence Match ( AT1G08090.1 )
(BLAST)
001: MGDSTGEPGS SMHGVTGREQ SFAFSVQSPI VHTDKTAKFD LPVDTEHKAT VFKLFSFAKP HMRTFHLSWI SFSTCFVSTF AAAPLVPIIR ENLNLTKQDI
101: GNAGVASVSG SIFSRLVMGA VCDLLGPRYG CAFLVMLSAP TVFSMSFVSD AAGFITVRFM IGFCLATFVS CQYWMSTMFN SQIIGLVNGT AAGWGNMGGG
201: ITQLLMPIVY EIIRRCGSTA FTAWRIAFFV PGWLHIIMGI LVLNLGQDLP DGNRATLEKA GEVAKDKFGK ILWYAVTNYR TWIFVLLYGY SMGVELSTDN
301: VIAEYFFDRF HLKLHTAGLI AACFGMANFF ARPAGGYASD FAAKYFGMRG RLWTLWIIQT AGGLFCVWLG RANTLVTAVV AMVLFSMGAQ AACGATFAIV
401: PFVSRRALGI ISGLTGAGGN FGSGLTQLLF FSTSHFTTEQ GLTWMGVMIV ACTLPVTLVH FPQWGSMFLP PSTDPVKGTE AHYYGSEWNE QEKQKNMHQG
501: SLRFAENAKS EGGRRVRSAA TPPENTPNNV
Arabidopsis Description
NRT2.1High-affinity nitrate transporter 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O82811]
SUBAcon: [peroxisome,cytosol,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.